Literature DB >> 1454353

Experimental studies on the origin of the genetic code and the process of protein synthesis: a review update.

J C Lacey1, N S Wickramasinghe, G W Cook.   

Abstract

This article is an update of our earlier review (Lacey and Mullins, 1983) in this journal on the origin of the genetic code and the process of protein synthesis. It is our intent to discuss only experimental evidence published since then although there is the necessity to mention the old enough to place the new in context. We do not include theoretical nor hypothetical treatments of the code or protein synthesis. Relevant data regarding the evolution of tRNAs and the recognition of tRNAs by aminoacyl-tRNA-synthetases are discussed. Our present belief is that the code arose based on a core of early assignments which were made on a physico-chemical and anticodonic basis and this was expanded with new assignments later. These late assignments do not necessarily show an amino acid-anticodon relatedness. In spite of the fact that most data suggest a code origin based on amino acid-anticodon relationships, some new data suggesting preferential binding of Arg to its codons are discussed. While information regarding coding is not increasing very rapidly, information regarding the basic chemistry of the process of protein synthesis has increased significantly, principally relating to aminoacylation of mono- and polyribonucleotides. Included in those studies are several which show stereoselective reactions of L-amino acids with nucleotides having D-sugars. Hydrophobic interactions definitely play a role in the preferences which have been observed.

Entities:  

Keywords:  NASA Discipline Exobiology; Non-NASA Center

Mesh:

Substances:

Year:  1992        PMID: 1454353     DOI: 10.1007/bf01810856

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  105 in total

Review 1.  The revised genetic code.

Authors:  J Ninio
Journal:  Orig Life Evol Biosph       Date:  1990       Impact factor: 1.950

Review 2.  Evolution of the genetic code as affected by anticodon content.

Authors:  S Osawa; T H Jukes
Journal:  Trends Genet       Date:  1988-07       Impact factor: 11.639

3.  Nonrandomness in prebiotic peptide synthesis.

Authors:  S Tyagi; C Ponnamperuma
Journal:  J Mol Evol       Date:  1990-05       Impact factor: 2.395

4.  Evolution of anticodons: variations in the genetic code.

Authors:  T H Jukes; S Osawa; A Muto; N Lehman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  Is there a discriminator site in transfer RNA?

Authors:  D M Crothers; T Seno; G Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

6.  Aminoacyl transfer from adenylate anhydride to the 2'OH groups along the backbone of polyribonucleotides.

Authors:  W E White; J C Lacey; A L Weber
Journal:  Biochem Biophys Res Commun       Date:  1973-03-17       Impact factor: 3.575

7.  Chemical esterification of 5'-AMP occurs predominantly at the 2' position.

Authors:  J C Lacey; R D Thomas; N S Wickaramasinghe; C L Watkins
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

8.  Primary structure of alanyl-tRNA synthetase and the regulation of its mRNA levels in Bombyx mori.

Authors:  P K Chang; J D Dignam
Journal:  J Biol Chem       Date:  1990-12-05       Impact factor: 5.157

9.  Binding constants of phenylalanine for the four mononucleotides.

Authors:  M A Khaled; D W Mullins; J C Lacey
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

10.  Specificity of arginine binding by the Tetrahymena intron.

Authors:  M Yarus
Journal:  Biochemistry       Date:  1989-02-07       Impact factor: 3.162

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  17 in total

1.  Guilt by association: the arginine case revisited.

Authors:  R D Knight; L F Landweber
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

2.  Primordial coding of amino acids by adsorbed purine bases.

Authors:  Stephen J Sowerby; George B Petersen; Nils G Holm
Journal:  Orig Life Evol Biosph       Date:  2002-02       Impact factor: 1.950

3.  Artificially ambiguous genetic code confers growth yield advantage.

Authors:  V Pezo; D Metzgar; T L Hendrickson; W F Waas; S Hazebrouck; V Döring; P Marlière; P Schimmel; V De Crécy-Lagard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-26       Impact factor: 11.205

4.  The origin of the genetic code: matter of metabolism or physicochemical determinism?

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2013-10-26       Impact factor: 2.395

5.  Couplings of character and of chirality in the origin of the genetic system.

Authors:  J C Lacey; N S Wickramasinghe; G W Cook; G Anderson
Journal:  J Mol Evol       Date:  1993-09       Impact factor: 2.395

Review 6.  The role of self-assembled monolayers of the purine and pyrimidine bases in the emergence of life.

Authors:  S J Sowerby; W M Heckl
Journal:  Orig Life Evol Biosph       Date:  1998-06       Impact factor: 1.950

7.  The beta-sheets of proteins, the biosynthetic relationships between amino acids, and the origin of the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1996-12       Impact factor: 1.950

8.  The phylogeny of tRNAs seems to confirm the predictions of the coevolution theory of the origin of the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1995-12       Impact factor: 1.950

9.  Uniquely localized intra-molecular amino acid concentrations at the glycolytic enzyme catalytic/active centers of Archaea, Bacteria and Eukaryota are associated with their proposed temporal appearances on earth.

Authors:  J Dennis Pollack; David Gerard; Dennis K Pearl
Journal:  Orig Life Evol Biosph       Date:  2013-05-29       Impact factor: 1.950

10.  Emergence of a code in the polymerization of amino acids along RNA templates.

Authors:  Jean Lehmann; Michel Cibils; Albert Libchaber
Journal:  PLoS One       Date:  2009-06-03       Impact factor: 3.240

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