Literature DB >> 7312620

Conformation of DNA in chromatin reconstituted from poly [d(A-T)] and the core histones.

S Brahms, S K Brahmachari, N Angelier, J G Brahms.   

Abstract

Present results provide direct evidence of the nature of a conformational change in DNA when nucleosomes are formed from core histones and poly [d(A-T)]. First, we have found some features which have characteristic aspects of the A like conformation of DNA. Thus, an increased contribution due to a sugar conformation close to C3'-endo puckering is detected in the Raman spectra. In addition, the circular dichroism (C.D.) spectra of reconstituted chromatin with poly [d(A-T)] exhibits an increases intensity at about 262 nm. A second feature acquired by poly [d(A-T)] in nucleosome formation from core histones is related to the presence of a negative band at about 280 nm in the C.D.spectra. The nature of this change is correlated with a DNA conformation characterized by a decreased number of base pairs per turn (28,29). This indicates that these two features of reconstituted nucleosomes reflect the presence of two types of DNA conformations, which overall form is of the B type (22,36).

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Year:  1981        PMID: 7312620      PMCID: PMC327486          DOI: 10.1093/nar/9.19.4879

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  A STUDY OF CONFORMATION OF NUCLEIC ACIDS IN SOLUTION BY MEANS OF CIRCULAR DICHROISM.

Authors:  J BRAHMS; W F MOMMAERTS
Journal:  J Mol Biol       Date:  1964-10       Impact factor: 5.469

Review 2.  Summary: the molecular biology of the eukaryotic genome is coming of age.

Authors:  P Chambon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

3.  Nucleosome structure I: all four histones, H2A, H2B, H3, and H4, are required to form a nucleosome, but an H3-H4 subnucleosomal particle is formed with H3-H4 alone.

Authors:  P Oudet; J E Germond; M Sures; D Gallwitz; M Bellard; P Chambon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

4.  Physical properties of inner histone-DNA complexes.

Authors:  P N Bryan; E B Wright; M H Hsie; A L Olins; D E Olins
Journal:  Nucleic Acids Res       Date:  1978-10       Impact factor: 16.971

5.  How many base-pairs per turn does DNA have in solution and in chromatin? Some theoretical calculations.

Authors:  M Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  1978-02       Impact factor: 11.205

6.  Nucleosome structure: sites of interaction of proteins in the DNA grooves as determined by Raman scattering.

Authors:  D C Goodwin; J Vergne; J Brahms; N Defer; J Kruh
Journal:  Biochemistry       Date:  1979-05-15       Impact factor: 3.162

7.  Periodicity of deoxyribonuclease I digestion of chromatin.

Authors:  A Prunell; R D Kornberg; L Lutter; A Klug; M Levitt; F H Crick
Journal:  Science       Date:  1979-05-25       Impact factor: 47.728

8.  Helical repeat of DNA in solution.

Authors:  J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

9.  Circular dichroism and DNA secondary structure.

Authors:  W A Baase; W C Johnson
Journal:  Nucleic Acids Res       Date:  1979-02       Impact factor: 16.971

10.  A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.

Authors:  R H Simon; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1979-02       Impact factor: 16.971

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  6 in total

1.  Raman microspectroscopic approach to the study of human granulocytes.

Authors:  G J Puppels; H S Garritsen; G M Segers-Nolten; F F de Mul; J Greve
Journal:  Biophys J       Date:  1991-11       Impact factor: 4.033

2.  The structure of nucleosome core particles as revealed by difference Raman spectroscopy.

Authors:  H Hayashi; Y Nishimura; M Katahira; M Tsuboi
Journal:  Nucleic Acids Res       Date:  1986-03-25       Impact factor: 16.971

Review 3.  Transcriptionally active chromatin.

Authors:  R Tsanev
Journal:  Mol Biol Rep       Date:  1983-05       Impact factor: 2.316

4.  Replacement of trifluoroacetic acid with HCl in the hydrophobic purification steps of pediocin PA-1: a structural effect.

Authors:  Hélène Gaussier; Hélène Morency; Marc C Lavoie; Muriel Subirade
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

5.  Conformational transitions of poly(dA-dT)poly(dA-dT) in ethanolic solutions.

Authors:  M Vorlícková; P Sedlácek; J Kypr; J Sponar
Journal:  Nucleic Acids Res       Date:  1982-11-11       Impact factor: 16.971

6.  (AT)n is an interspersed repeat in the Xenopus genome.

Authors:  D R Greaves; R K Patient
Journal:  EMBO J       Date:  1985-10       Impact factor: 11.598

  6 in total

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