Literature DB >> 4054102

(AT)n is an interspersed repeat in the Xenopus genome.

D R Greaves, R K Patient.   

Abstract

We have observed (AT)34 and (AT)23 tracts close to the coding sequences of the Xenopus laevis tadpole alpha T1 and adult beta 1 globin genes, respectively. We show that (AT)n sequences are found as interspersed repeats within the Xenopus globin and histone gene loci. Using (AT)n co-polymer in filter hybridisation experiments we estimate that there are 10(4) (AT)n tracts per haploid Xenopus genome. Hybridisation to genomic blots of DNA from yeast, slime mold, trypanosome, fruit fly, salmon, chicken, rat, human, crab and Xenopus species shows that strictly alternating AT of sufficient length to hybridise appears to be most abundant in Xenopus and crab genomes. We show that the specificity of the co-polymer probe for strictly alternating AT is, however, dependent on the length of the probe. Hybridisation experiments using (TG)n copolymer suggest that this highly conserved repeat is found as clustered repeats in the Xenopus genome in contrast to other eukaryotic genomes so far studied.

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Year:  1985        PMID: 4054102      PMCID: PMC554552          DOI: 10.1002/j.1460-2075.1985.tb03979.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  93 in total

1.  The structure of the vimentin gene.

Authors:  W Quax; W V Egberts; W Hendriks; Y Quax-Jeuken; H Bloemendal
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

2.  A comparison of the promoter strengths of two eukaryotic genes in vitro reveals a region of DNA that can influence the rate of transcription in cis over long distances.

Authors:  S P Gregory; P H Butterworth
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971

3.  Molecular structure and evolutionary origin of human cardiac muscle actin gene.

Authors:  H Hamada; M G Petrino; T Kakunaga
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

4.  Molecular biology. CACA sequences - the ends and the means?

Authors:  J Rogers
Journal:  Nature       Date:  1983 Sep 8-14       Impact factor: 49.962

5.  The conserved nucleotide sequences of Bkm, which define Sxr in the mouse, are transcribed.

Authors:  L Singh; C Phillips; K W Jones
Journal:  Cell       Date:  1984-01       Impact factor: 41.582

6.  Replication and expression of Xenopus laevis globin genes injected into fertilized Xenopus eggs.

Authors:  M M Bendig; J G Williams
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

7.  Unusual sequences in the murine immunoglobulin mu-delta heavy-chain region.

Authors:  J E Richards; A C Gilliam; A Shen; P W Tucker; F R Blattner
Journal:  Nature       Date:  1983 Dec 1-7       Impact factor: 49.962

8.  Primary structure homology between the product of yeast cell division control gene CDC28 and vertebrate oncogenes.

Authors:  A T Lörincz; S I Reed
Journal:  Nature       Date:  1984 Jan 12-18       Impact factor: 49.962

9.  An unusual transposon encoding heat shock inducible and developmentally regulated transcripts in Dictyostelium.

Authors:  E Rosen; A Sivertsen; R A Firtel
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

10.  Nucleotide sequences of H1 histone genes from Xenopus laevis. A recently diverged pair of H1 genes and an unusual H1 pseudogene.

Authors:  P C Turner; T C Aldridge; H R Woodland; R W Old
Journal:  Nucleic Acids Res       Date:  1983-06-25       Impact factor: 16.971

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  14 in total

1.  Evidence for torsional stress in transcriptionally activated chromatin.

Authors:  M W Leonard; R K Patient
Journal:  Mol Cell Biol       Date:  1991-12       Impact factor: 4.272

Review 2.  Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code".

Authors:  P Vogt
Journal:  Hum Genet       Date:  1990-03       Impact factor: 4.132

3.  Scrambled duplications in the feline leukemia virus gag gene: a putative pattern for molecular evolution.

Authors:  I Laprevotte
Journal:  J Mol Evol       Date:  1989-08       Impact factor: 2.395

4.  Nucleotide sequence of the delta-beta-globin intergenic segment in the macaque: structure and evolutionary rates in higher primates.

Authors:  P Savatier; G Trabuchet; Y Chebloune; C Faure; G Verdier; V M Nigon
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

5.  Hypervariability of simple sequences as a general source for polymorphic DNA markers.

Authors:  D Tautz
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

6.  Nuclease recognition of an alternating structure in a d(AT)14 plasmid insert.

Authors:  J W Suggs; R W Wagner
Journal:  Nucleic Acids Res       Date:  1986-05-12       Impact factor: 16.971

7.  Sequence analysis of the upstream regions of Xenopus laevis beta-globin genes and arrangement of repetitive elements within the globin gene clusters.

Authors:  W Meyerhof; J Stalder; M Köster; U Wirthmüller; W Knöchel
Journal:  Mol Biol Rep       Date:  1990-02       Impact factor: 2.316

8.  Occurrence of the (GATA)n sequences in vertebrate and invertebrate genomes.

Authors:  G L Miklos; K I Matthaei; K C Reed
Journal:  Chromosoma       Date:  1989-09       Impact factor: 4.316

9.  Evolutionary and developmental aspects of two hemoglobin beta-chain genes (epsilon M and beta M) of opossum.

Authors:  B F Koop; M Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

10.  Mo-MuLV nucleotide sequence exhibits three levels of oligomeric repetitions, suggesting a stepwise molecular evolution.

Authors:  I Laprevotte
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

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