Literature DB >> 7248456

Structural dynamics of liganded myoglobin.

H Frauenfelder, G A Petsko.   

Abstract

X-ray crystallography can reveal the magnitudes and principal directions of the mean-square displacements of every atom in a protein. This structural information is complementary to the temporal information obtainable by spectroscopic techniques such as nuclear magnetic resonance. Determination of the temperature dependence of the mean-square displacements makes it possible to separate large conformational motions from simple thermal vibrations. The contribution of crystal lattice disorder to the overall apparent displacement can be estimated by Mössbauer spectroscopy. This technique has been applied to high resolution x-ray diffraction data from sperm whale myoglobin in its Met iron and oxy cobalt forms. Both crystal structures display regions of large conformational motions, particularly at the chain termini and in the region of the proximal histidine. Overall, the mean-square displacement increases with increasing distance from the center of gravity of the molecule. Some regions of the heme pocket in oxy cobalt myoglobin are more rigid than the corresponding regions in Met myoglobin.

Entities:  

Mesh:

Substances:

Year:  1980        PMID: 7248456      PMCID: PMC1327341          DOI: 10.1016/S0006-3495(80)84984-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Neutron diffraction analysis of myoglobin: structure of the carbon monoxide derivative.

Authors:  J C Norvell; A C Nunes; B P Schoenborn
Journal:  Science       Date:  1975-11-07       Impact factor: 47.728

2.  Design of a diffractometer and flow cell system for X-ray analysis of crystalline proteins with applications to the crystal chemistry of ribonuclease-S.

Authors:  H W Wyckoff; M Doscher; D Tsernoglou; T Inagami; L N Johnson; K D Hardman; N M Allewell; D M Kelly; F M Richards
Journal:  J Mol Biol       Date:  1967-08-14       Impact factor: 5.469

3.  Protein crystallography at sub-zero temperatures: cryo-protective mother liquors for protein crystals.

Authors:  G A Petsko
Journal:  J Mol Biol       Date:  1975-08-15       Impact factor: 5.469

4.  Dynamics of folded proteins.

Authors:  J A McCammon; B R Gelin; M Karplus
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

Review 5.  Hydrogen exchange.

Authors:  S W Englander; N W Downer; H Teitelbaum
Journal:  Annu Rev Biochem       Date:  1972       Impact factor: 23.643

6.  Relation between structure, co-operativity and spectra in a model of hemoglobin action.

Authors:  J J Hopfield
Journal:  J Mol Biol       Date:  1973-06-25       Impact factor: 5.469

7.  Dynamics of a protein matrix revealed by fluorescence quenching.

Authors:  M R Eftink; C A Ghiron
Journal:  Proc Natl Acad Sci U S A       Date:  1975-09       Impact factor: 11.205

Review 8.  The design of computing systems for molecular modeling.

Authors:  R J Feldmann
Journal:  Annu Rev Biophys Bioeng       Date:  1976

9.  Structure of oxymyoglobin.

Authors:  S E Phillips
Journal:  Nature       Date:  1978-05-18       Impact factor: 49.962

10.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

View more
  17 in total

1.  Low dielectric response in enzyme active site.

Authors:  E L Mertz; L I Krishtalik
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

2.  Molecular mimicry of substrate oxygen atoms by water molecules in the beta-amylase active site.

Authors:  G Pujadas; J Palau
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

3.  Sequence composition and environment effects on residue fluctuations in protein structures.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

4.  Effects of soman inhibition and of structural differences on cholinesterase molecular dynamics: a neutron scattering study.

Authors:  F Gabel; M Weik; P Masson; F Renault; D Fournier; L Brochier; B P Doctor; A Saxena; I Silman; G Zaccai
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

5.  Flexibility of the "rigid" classics or rugged bottom of the folding funnels of myoglobin, lysozyme, RNase A, chymotrypsin, cytochrome c, and carboxypeptidase A1.

Authors:  Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2017-10-16

6.  Structure fluctuations and conformational changes in protein binding.

Authors:  Anatoly M Ruvinsky; Tatsiana Kirys; Alexander V Tuzikov; Ilya A Vakser
Journal:  J Bioinform Comput Biol       Date:  2012-04       Impact factor: 1.122

Review 7.  Electrogenic proton transport in epithelial membranes.

Authors:  P R Steinmetz; O S Andersen
Journal:  J Membr Biol       Date:  1982       Impact factor: 1.843

8.  Proton magnetic resonance study of the influence of heme 2,4 substituents on the exchange rates of labile protons in the heme pocket of myoglobin.

Authors:  G N La Mar; R Krishnamoorthi
Journal:  Biophys J       Date:  1983-11       Impact factor: 4.033

9.  Conformational substates in a protein: structure and dynamics of metmyoglobin at 80 K.

Authors:  H Hartmann; F Parak; W Steigemann; G A Petsko; D R Ponzi; H Frauenfelder
Journal:  Proc Natl Acad Sci U S A       Date:  1982-08       Impact factor: 11.205

10.  Picosecond fluorescence decay of tryptophans in myoglobin.

Authors:  R M Hochstrasser; D K Negus
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.