Literature DB >> 10681440

Low dielectric response in enzyme active site.

E L Mertz1, L I Krishtalik.   

Abstract

The kinetics of charge transfer depend crucially on the dielectric reorganization of the medium. In enzymatic reactions that involve charge transfer, atomic dielectric response of the active site and of its surroundings determines the efficiency of the protein as a catalyst. We report direct spectroscopic measurements of the reorganization energy associated with the dielectric response in the active site of alpha-chymotrypsin. A chromophoric inhibitor of the enzyme is used as a spectroscopic probe. We find that water strongly affects the dielectric reorganization in the active site of the enzyme in solution. The reorganization energy of the protein matrix in the vicinity of the active site is similar to that of low-polarity solvents. Surprisingly, water exhibits an anomalously high dielectric response that cannot be described in terms of the dielectric continuum theory. As a result, sequestering the active site from the aqueous environment inside low-dielectric enzyme body dramatically reduces the dielectric reorganization. This reduction is particularly important for controlling the rate of enzymatic reactions.

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Year:  2000        PMID: 10681440      PMCID: PMC15757          DOI: 10.1073/pnas.050316997

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

2.  Crystallographic studies of the dynamic properties of lysozyme.

Authors:  P J Artymiuk; C C Blake; D E Grace; S J Oatley; D C Phillips; M J Sternberg
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

3.  [Solid-state hydrolysis of cinnamoyl-alpha-chymotrypsin].

Authors:  V Ia Rosliakov; Iu I Khurgin
Journal:  Biokhimiia       Date:  1972 May-Jun

4.  Structure and refinement of penicillopepsin at 1.8 A resolution.

Authors:  M N James; A R Sielecki
Journal:  J Mol Biol       Date:  1983-01-15       Impact factor: 5.469

Review 5.  The internal dynamics of globular proteins.

Authors:  M Karplus; J A McCammon
Journal:  CRC Crit Rev Biochem       Date:  1981

Review 6.  Dynamics of electron transfer in bacterial photosynthesis.

Authors:  J Jortner
Journal:  Biochim Biophys Acta       Date:  1980-12

7.  Structural dynamics of liganded myoglobin.

Authors:  H Frauenfelder; G A Petsko
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

8.  Catalytic acceleration of reactions by enzymes. Effect of screening of a polar medium by a protein globule.

Authors:  L I Krishtalik
Journal:  J Theor Biol       Date:  1980-10-21       Impact factor: 2.691

9.  [Solid-state enzymatic reactions. II. Chymotrypsin hydrolysis of N-succinyl-L-phenylalanine n-nitroanilide].

Authors:  Iu I Khurgin; P V Medvedeva; V Ia Rosliakov
Journal:  Biofizika       Date:  1977 Nov-Dec

10.  Dynamic properties of the lipid-water interface of model membranes as revealed by lifetime-resolved fluorescence emission spectra.

Authors:  J R Lakowicz; D Hogen
Journal:  Biochemistry       Date:  1981-03-03       Impact factor: 3.162

View more
  27 in total

1.  Photosynthetic electron transfer controlled by protein relaxation: analysis by Langevin stochastic approach.

Authors:  D A Cherepanov; L I Krishtalik; A Y Mulkidjanian
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  Gaussian fluctuations and linear response in an electron transfer protein.

Authors:  Thomas Simonson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

3.  Influence of the solvent structure on the electrostatic interactions in proteins.

Authors:  Alexander Rubinstein; Simon Sherman
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

4.  Quantification of helix-helix binding affinities in micelles and lipid bilayers.

Authors:  Andrei L Lomize; I D Pogozheva; H I Mosberg
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

5.  Semi-continuum electrostatic calculations of redox potentials in photosystem I.

Authors:  Vasily V Ptushenko; Dmitry A Cherepanov; Lev I Krishtalik; Alexey Yu Semenov
Journal:  Photosynth Res       Date:  2008-05-16       Impact factor: 3.573

Review 6.  Dielectric relaxation in proteins: the computational perspective.

Authors:  Thomas Simonson
Journal:  Photosynth Res       Date:  2008-04-29       Impact factor: 3.573

7.  Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Paul A Sigala; Daniel A Kraut; Jose M M Caaveiro; Brandon Pybus; Eliza A Ruben; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2008-09-23       Impact factor: 15.419

8.  Reorganization energies of the electron transfer reactions involving quinones in the reaction center of Rhodobacter sphaeroides.

Authors:  Vasily V Ptushenko; Lev I Krishtalik
Journal:  Photosynth Res       Date:  2018-07-18       Impact factor: 3.573

9.  Experimentally assessing molecular dynamics sampling of the protein native state conformational distribution.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biophys Chem       Date:  2012-02-14       Impact factor: 2.352

10.  Peptide conformer acidity analysis of protein flexibility monitored by hydrogen exchange.

Authors:  David M LeMaster; Janet S Anderson; Griselda Hernández
Journal:  Biochemistry       Date:  2009-10-06       Impact factor: 3.162

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