Literature DB >> 30250772

Flexibility of the "rigid" classics or rugged bottom of the folding funnels of myoglobin, lysozyme, RNase A, chymotrypsin, cytochrome c, and carboxypeptidase A1.

Vladimir N Uversky1,2.   

Abstract

The abilities to crystalize of a globular protein and to solve its crystal structure seem to represent triumph of the lock-and-key model of protein functionality, where the presence of unique 3D structure resembling aperiodic crystal is considered as a prerequisite for a given protein to possess specific biologic activity. The history of protein crystallography has its roots in first crystal structures of myoglobin, lysozyme, RNase A, chymotrypsin, cytochrome c, and carboxypeptidase A1 solved more than 50 y ago. This article briefly considers extensive structural information currently available for these proteins and shows that the bottoms of their folding funnels (i.e., the lowest parts of their potential energy landscapes) are not smoothed but rugged. In other words, these crystallization classics are characterized by significant conformational flexibility and are not rigid (immobile) crystal-like entities.

Entities:  

Keywords:  conformational dynamics; intrinsically disordered proteins; protein function; protein structure; structural flexibility; structure-function relationship

Year:  2017        PMID: 30250772      PMCID: PMC6149440          DOI: 10.1080/21690707.2017.1355205

Source DB:  PubMed          Journal:  Intrinsically Disord Proteins        ISSN: 2169-0707


  71 in total

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Authors:  Pratul K Agarwal
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Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

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Journal:  Proteins       Date:  1998-08-01

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Authors:  Vladimir N Uversky
Journal:  Biochim Biophys Acta       Date:  2012-12-23

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Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

8.  Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond.

Authors:  Joan L Arolas; Grzegorz M Popowicz; Sílvia Bronsoms; Francesc X Aviles; Robert Huber; Tad A Holak; Salvador Ventura
Journal:  J Mol Biol       Date:  2005-09-30       Impact factor: 5.469

9.  Archaic chaos: intrinsically disordered proteins in Archaea.

Authors:  Bin Xue; Robert W Williams; Christopher J Oldfield; A Keith Dunker; Vladimir N Uversky
Journal:  BMC Syst Biol       Date:  2010-05-28

10.  Oligonucleotide-directed mutagenesis as a general and powerful method for studies of protein function.

Authors:  G Dalbadie-McFarland; L W Cohen; A D Riggs; C Morin; K Itakura; J H Richards
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

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