Literature DB >> 301613

Dynamics of folded proteins.

J A McCammon, B R Gelin, M Karplus.   

Abstract

The dynamics of a folded globular protein (bovine pancreatic trypsin inhibitor) have been studied by solving the equations of motion for the atoms with an empirical potential energy function. The results provide the magnitude, correlations and decay of fluctuations about the average structure. These suggest that the protein interior is fluid-like in that the local atom motions have a diffusional character.

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Year:  1977        PMID: 301613     DOI: 10.1038/267585a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  336 in total

1.  Enzyme specificity under dynamic control II: Principal component analysis of alpha-lytic protease using global and local solvent boundary conditions.

Authors:  N Ota; D A Agard
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Peptide-plane flipping in proteins.

Authors:  S Hayward
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  Assessing the effect of conformational averaging on the measured values of observables.

Authors:  R Bürgi; J Pitera; W F van Gunsteren
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

4.  The third leg: molecular dynamics simulations of lipid binding proteins.

Authors:  T B Woolf; M Tychko
Journal:  Mol Cell Biochem       Date:  1999-02       Impact factor: 3.396

5.  Quantifying uncertainty and sampling quality in biomolecular simulations.

Authors:  Alan Grossfield; Daniel M Zuckerman
Journal:  Annu Rep Comput Chem       Date:  2009-01-01

6.  Dynamic molecules: molecular dynamics for everyone. An internet-based access to molecular dynamic simulations: basic concepts.

Authors:  Martin Frank; Peter Gutbrod; Chokri Hassayoun; Claus-W von Der Lieth
Journal:  J Mol Model       Date:  2003-08-08       Impact factor: 1.810

7.  Nucleotide modifications and tRNA anticodon-mRNA codon interactions on the ribosome.

Authors:  Olof Allnér; Lennart Nilsson
Journal:  RNA       Date:  2011-10-25       Impact factor: 4.942

8.  Investigating how peptide length and a pathogenic mutation modify the structural ensemble of amyloid beta monomer.

Authors:  Yu-Shan Lin; Gregory R Bowman; Kyle A Beauchamp; Vijay S Pande
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

9.  Molecular engineering of RANTES peptide mimetics with potent anti-HIV-1 activity.

Authors:  Paolo Lusso; Luca Vangelista; Raffaello Cimbro; Massimiliano Secchi; Francesca Sironi; Renato Longhi; Marina Faiella; Ornella Maglio; Vincenzo Pavone
Journal:  FASEB J       Date:  2011-01-03       Impact factor: 5.191

10.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

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