Literature DB >> 11566760

Spatial range of autocrine signaling: modeling and computational analysis.

S Y Shvartsman1, H S Wiley, W M Deen, D A Lauffenburger.   

Abstract

Autocrine loops formed by growth factors and their receptors have been identified in a large number of developmental, physiological, and pathological contexts. In general, the spatially distributed and recursive nature of autocrine signaling systems makes their experimental analysis, and often even their detection, very difficult. Here, we combine Brownian motion theory, Monte Carlo simulations, and reaction-diffusion models to analyze the spatial operation of autocrine loops. Within this modeling framework, the ability of autocrine cells to recapture the endogenous ligand and the distances traveled by autocrine ligands are explicitly related to ligand diffusion coefficients, density of surface receptors, ligand secretion rate, and rate constants of ligand binding and endocytic internalization. Applying our models to study autocrine loops in the epidermal growth factor receptor system, we find that autocrine loops can be highly localized--even at the level of a single cell. We demonstrate how the variations in molecular and cellular parameters may "tune" the spatial range of autocrine signals over several orders of magnitude: from microns to millimeters. We argue that this versatile regulation of the spatial range of autocrine signaling enables autocrine cells to perceive a broad spectrum of environmental information.

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Year:  2001        PMID: 11566760      PMCID: PMC1301661          DOI: 10.1016/S0006-3495(01)75837-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  55 in total

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5.  Stimulation-induced down-regulation of tumor necrosis factor-alpha converting enzyme.

Authors:  J R Doedens; R A Black
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

6.  Stimulation of cleavage of membrane proteins by calmodulin inhibitors.

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Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

Review 7.  Control of EGF receptor signalling: lessons from fruitflies.

Authors:  T Casci; M Freeman
Journal:  Cancer Metastasis Rev       Date:  1999       Impact factor: 9.264

8.  Ectodomain shedding of TGF-alpha and other transmembrane proteins is induced by receptor tyrosine kinase activation and MAP kinase signaling cascades.

Authors:  H Fan; R Derynck
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

9.  The tetraspanin CD9 associates with transmembrane TGF-alpha and regulates TGF-alpha-induced EGF receptor activation and cell proliferation.

Authors:  W Shi; H Fan; L Shum; R Derynck
Journal:  J Cell Biol       Date:  2000-02-07       Impact factor: 10.539

10.  Ectodomain shedding of epidermal growth factor receptor ligands is required for keratinocyte migration in cutaneous wound healing.

Authors:  S Tokumaru; S Higashiyama; T Endo; T Nakagawa; J I Miyagawa; K Yamamori; Y Hanakawa; H Ohmoto; K Yoshino; Y Shirakata; Y Matsuzawa; K Hashimoto; N Taniguchi
Journal:  J Cell Biol       Date:  2000-10-16       Impact factor: 10.539

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  43 in total

1.  Stochastic model of autocrine and paracrine signals in cell culture assays.

Authors:  Lazaros Batsilas; Alexander M Berezhkovskii; Stanislav Y Shvartsman
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2.  Long-range signal transmission in autocrine relays.

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Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

3.  Mechanotransduction through growth-factor shedding into the extracellular space.

Authors:  Daniel J Tschumperlin; Guohao Dai; Ivan V Maly; Tadashi Kikuchi; Lily H Laiho; Anna K McVittie; Kathleen J Haley; Craig M Lilly; Peter T C So; Douglas A Lauffenburger; Roger D Kamm; Jeffrey M Drazen
Journal:  Nature       Date:  2004-04-21       Impact factor: 49.962

4.  Effects of convective transport on chemical signal propagation in epithelia.

Authors:  Marek Nebyla; Michal Přibyl; Igor Schreiber
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

5.  Ligand accumulation in autocrine cell cultures.

Authors:  Michael I Monine; Alexander M Berezhkovskii; Elizabeth J Joslin; H Steven Wiley; Douglas A Lauffenburger; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

6.  A computational framework for the topological analysis and targeted disruption of signal transduction networks.

Authors:  Madhukar S Dasika; Anthony Burgard; Costas D Maranas
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

7.  Computational modeling of extracellular mechanotransduction.

Authors:  Nikola Kojić; Milos Kojić; Daniel J Tschumperlin
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

8.  Array feature size influences nucleic acid surface capture in DNA microarrays.

Authors:  David S Dandy; Peng Wu; David W Grainger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-07       Impact factor: 11.205

9.  Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm.

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10.  Time and length scales of autocrine signals in three dimensions.

Authors:  Mathieu Coppey; Alexander M Berezhkovskii; Stuart C Sealfon; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2007-09-15       Impact factor: 4.033

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