Literature DB >> 22697521

Communication: Clusters of absorbing disks on a reflecting wall: competition for diffusing particles.

Alexander M Berezhkovskii1, Leonardo Dagdug, Vladimir A Lizunov, Joshua Zimmerberg, Sergey M Bezrukov.   

Abstract

Trapping of diffusing particles by a cluster of absorbing disks on the otherwise reflecting wall is a manifestly many-body problem because of the disk competition for the particles. By replacing the cluster with an effective uniformly absorbing spot, we derive a simple formula for the rate constant that characterizes the trapping. The formula shows how the rate constant depends on the size and shape of the cluster.

Mesh：

Year:  2012        PMID： 22697521      PMCID： PMC3382924          DOI： 10.1063/1.4726015

Source DB:  PubMed          Journal:  J Chem Phys        ISSN： 0021-9606            Impact factor:   3.488


  27 in total

Review 1.  Model systems, lipid rafts, and cell membranes.

Authors:  Kai Simons; Winchil L C Vaz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

3.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

4.  Time dependent rate of diffusion-influenced ligand binding to receptors on cell surfaces.

Authors:  R Zwanzig; A Szabo
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

Review 5.  Functions of lipid rafts in biological membranes.

Authors:  D A Brown; E London
Journal:  Annu Rev Cell Dev Biol       Date:  1998       Impact factor: 13.827

6.  Optimal receptor-cluster size determined by intrinsic and extrinsic noise.

Authors:  Gerardo Aquino; Diana Clausznitzer; Sylvain Tollis; Robert G Endres
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-02-24

7.  Kinetics of ligand binding to a cluster of membrane-associated receptors.

Authors:  A A Potanin; V V Verkhusha; O S Belokoneva; F W Wiegel
Journal:  Eur Biophys J       Date:  1994       Impact factor: 1.733

8.  The effect of receptor clustering on diffusion-limited forward rate constants.

Authors:  B Goldstein; F W Wiegel
Journal:  Biophys J       Date:  1983-07       Impact factor: 4.033

9.  Self-catalyzed insertion of proteins into phospholipid membranes.

Authors:  X Xu; M Colombini
Journal:  J Biol Chem       Date:  1996-09-27       Impact factor: 5.157

10.  Ion channel clustering at the axon initial segment and node of Ranvier evolved sequentially in early chordates.

Authors:  Alexis S Hill; Atsuo Nishino; Koichi Nakajo; Giuxin Zhang; Jaime R Fineman; Michael E Selzer; Yasushi Okamura; Edward C Cooper
Journal:  PLoS Genet       Date:  2008-12-26       Impact factor: 5.917
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  3 in total

1.  Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2018-07-28       Impact factor: 3.488

2.  Trapping of diffusing particles by clusters of absorbing disks on a reflecting wall with disk centers on sites of a square lattice.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Marco-Vinicio Vazquez; Vladimir A Lizunov; Joshua Zimmerberg; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2013-02-14       Impact factor: 3.488

Review 3.  Trapping by clusters of channels, receptors, and transporters: quantitative description.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Vladimir A Lizunov; Joshua Zimmerberg; Sergey M Bezrukov
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033
  3 in total

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