Literature DB >> 7025834

Evidence for a two-state transition in papain that may have no close analogue in ficin. Differences in the disposition of cationic sites and hydrophobic binding areas in the active centres of papain and ficin.

K Brocklehurst, J P Malthouse.   

Abstract

The kinetics of the reactions of the active-centre thiol groups of papain (EC 3.4.22.2) and ficin (EC 3.4.22.3) with the two-protonic-state reactivity probes 2,2'-dipyridyl disulphide, n-propyl 2-pyridyl disulphide and 4-(N-aminoethyl 2'-pyridyl disulphide)- 7-nitrobenzo-2-oxa-1,3-diazole (compound I) were studied over a wide range of pH. Differences between the reactivities of ficin and papain towards the cationic forms of the alkyl 2-pyridyl disulphide probes suggest that ficin contains a cationic site without exact analogue in papain, and the striking difference in the shapes of the pH-rate profiles for the reactions of the two enzymes with compound (1) suggests differences in the mobilities or dispositions of the active-centre histidine imidazole groups with respect to relevant hydrophobic binding areas. The evidence from reactivity-probe studies that the papain catalytic mechanism involves substantial repositioning of the active-centre imidazole group during the catalytic act does not apply also to ficin. If ficin contains an aspartic acid residue analogous to aspartic acid-158 in papain, the pKa of its carboxy group is probably significantly lower than the pKa of the analogous group in papain.

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Year:  1980        PMID: 7025834      PMCID: PMC1162271          DOI: 10.1042/bj1910707

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  31 in total

1.  On the mechanism of action of streptococcal proteinase. 3. The effect of pH, organic solvents, and deuterium oxide on the proteinase-catalyzed hydrolysis of N-acylamino acid esters.

Authors:  A A Kortt; T Y Liu
Journal:  Biochemistry       Date:  1973-01-16       Impact factor: 3.162

2.  The location of the active-site histidine residue in the primary sequence of papain.

Authors:  S S Husain; G Lowe
Journal:  Biochem J       Date:  1968-08       Impact factor: 3.857

3.  On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1968-09-06       Impact factor: 3.575

4.  Structure of papain.

Authors:  J Drenth; J N Jansonius; R Koekoek; H M Swen; B G Wolthers
Journal:  Nature       Date:  1968-06-08       Impact factor: 49.962

5.  A reinvestigation of residues 64-68 and 175 in papain. Evidence that residues 64 and 175 are asparagine.

Authors:  S S Husain; G Lowe
Journal:  Biochem J       Date:  1970-02       Impact factor: 3.857

6.  On the size of the active site in proteases. I. Papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1967-04-20       Impact factor: 3.575

7.  Reactions of papain and of low-molecular-weight thiols with some aromatic disulphides. 2,2'-Dipyridyl disulphide as a convenient active-site titrant for papain even in the presence of other thiols.

Authors:  K Brocklehurst; G Little
Journal:  Biochem J       Date:  1973-05       Impact factor: 3.857

8.  The amino acid sequence around the active-site cysteine and histidine residues, and the buried cysteine residue in ficin.

Authors:  S S Husain; G Lowe
Journal:  Biochem J       Date:  1970-04       Impact factor: 3.857

9.  Evidence for histidine in the active site of papain.

Authors:  S S Husain; G Lowe
Journal:  Biochem J       Date:  1968-08       Impact factor: 3.857

10.  Reactivities of the various protonic states in the reactions of papain and of L-cysteine with 2,2'- and with 4,4'- dipyridyl disulphide: evidence for nucleophilic reactivity in the un-ionized thiol group of the cysteine-25 residue of papain occasioned by its interaction with the histidine-159-asparagine-175 hydrogen-bonded system.

Authors:  K Brocklehurst; G Little
Journal:  Biochem J       Date:  1972-06       Impact factor: 3.857

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  16 in total

1.  pH-activity curves for enzyme-catalysed reactions in which the hydron is a product or reactant.

Authors:  H B Dixon; K Brocklehurst; K F Tipton
Journal:  Biochem J       Date:  1987-12-01       Impact factor: 3.857

2.  The interplay of electrostatic fields and binding interactions determining catalytic-site reactivity in actinidin. A possible origin of differences in the behaviour of actinidin and papain.

Authors:  D Kowlessur; M O'Driscoll; C M Topham; W Templeton; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1989-04-15       Impact factor: 3.857

3.  Identification of signalling and non-signalling binding contributions to enzyme reactivity. Alternative combinations of binding interactions provide for change in transition-state geometry in reactions of papain.

Authors:  D Kowlessur; C M Topham; E W Thomas; M O'Driscoll; W Templeton; K Brocklehurst
Journal:  Biochem J       Date:  1989-03-15       Impact factor: 3.857

4.  Chymopapain A. Purification and investigation by covalent chromatography and characterization by two-protonic-state reactivity-probe kinetics, steady-state kinetics and resonance Raman spectroscopy of some dithioacyl derivatives.

Authors:  B S Baines; K Brocklehurst; P R Carey; M Jarvis; E Salih; A C Storer
Journal:  Biochem J       Date:  1986-01-01       Impact factor: 3.857

5.  A general framework of cysteine-proteinase mechanism deduced from studies on enzymes with structurally different analogous catalytic-site residues Asp-158 and -161 (papain and actinidin), Gly-196 (cathepsin B) and Asn-165 (cathepsin H). Kinetic studies up to pH 8 of the hydrolysis of N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide catalysed by cathepsin B and of L-arginine 2-naphthylamide catalysed by cathepsin H.

Authors:  F Willenbrock; K Brocklehurst
Journal:  Biochem J       Date:  1985-04-15       Impact factor: 3.857

6.  Effects of conformational selectivity and of overlapping kinetically influential ionizations on the characteristics of pH-dependent enzyme kinetics. Implications of free-enzyme pKa variability in reactions of papain for its catalytic mechanism.

Authors:  K Brocklehurst; S J Willenbrock; E Salih
Journal:  Biochem J       Date:  1983-06-01       Impact factor: 3.857

7.  Evidence for a close similarity in the catalytic sites of papain and ficin in near-neutral media despite differences in acidic and alkaline media. Kinetics of the reactions of papain and ficin with chloroacetate.

Authors:  K Brocklehurst; S M Mushiri; G Patel; F Willenbrock
Journal:  Biochem J       Date:  1982-01-01       Impact factor: 3.857

8.  Differences between the electric fields of the catalytic sites of papain and actinidin detected by using the thiol-located nitrobenzofurazan label as a spectroscopic reporter group.

Authors:  K Brocklehurst; E Salih; T S Lodwig
Journal:  Biochem J       Date:  1984-06-01       Impact factor: 3.857

9.  Natural structural variation in enzymes as a tool in the study of mechanism exemplified by a comparison of the catalytic-site structure and characteristics of cathepsin B and papain. pH-dependent kinetics of the reactions of cathepsin B from bovine spleen and from rat liver with a thiol-specific two-protonic-state probe (2,2'-dipyridyl disulphide) and with a specific synthetic substrate (N-alpha-benzyloxycarbonyl-L-arginyl-L-arginine 2-naphthylamide).

Authors:  F Willenbrock; K Brocklehurst
Journal:  Biochem J       Date:  1984-09-15       Impact factor: 3.857

10.  Catalytic-site characteristics of the porcine calpain II 80 kDa/18 kDa heterodimer revealed by selective reaction of its essential thiol group with two-hydronic-state time-dependent inhibitors: evidence for a catalytic site Cys/His interactive system and an ionizing modulatory group.

Authors:  G W Mellor; S K Sreedharan; D Kowlessur; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

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