Literature DB >> 6959108

Relationship between the total size of exons and introns in protein-coding genes of higher eukaryotes.

H Naora, N J Deacon.   

Abstract

We have attempted to ascertain the correlation between the genetic information content in the exons and the surrounding intron sequences with regard to their spatial arrangement within a gene. A comparison is made of the sizes, taken from recent publications, of exons and introns of approximately equal to 80 different protein-coding chromosomal genes, mostly from higher eukaryotes. The exons of these genes do not show very marked variation in size and can be classified into three major discrete and two minor additional size groups, whereas individual introns vary considerably in size within and between genes. Notwithstanding, the overall length of all introns present within a given gene is a function of the total size, mostly corresponding to the total genetic information content, of the exons. Three cases that violate this exon-size dependency of introns are genes coding for (i) histone H1, feather keratin, and interferons, (ii) tubulin and actin, and (iii) silk fibroin. The exons of these genes are larger than 0.7 kilobase pair in total size and the genes show a strong sequence homogeneity among the repetitious family members or internal repeats of coding sequences within the gene. We propose that conservation of sequences, which is required by the family members, internal repeats, or the entire gene, would actually motivate the removal of introns.

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Year:  1982        PMID: 6959108      PMCID: PMC347086          DOI: 10.1073/pnas.79.20.6196

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  73 in total

1.  Sequences at the somatic recombination sites of immunoglobulin light-chain genes.

Authors:  H Sakano; K Hüppi; G Heinrich; S Tonegawa
Journal:  Nature       Date:  1979-07-26       Impact factor: 49.962

Review 2.  Histone genes and histone messengers.

Authors:  L H Kedes
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

3.  A kappa-immunoglobulin gene is formed by site-specific recombination without further somatic mutation.

Authors:  J G Seidman; E E Max; P Leder
Journal:  Nature       Date:  1979-08-02       Impact factor: 49.962

4.  Domains and the hinge region of an immunoglobulin heavy chain are encoded in separate DNA segments.

Authors:  H Sakano; J H Rogers; K Hüppi; C Brack; A Traunecker; R Maki; R Wall; S Tonegawa
Journal:  Nature       Date:  1979-02-22       Impact factor: 49.962

5.  Evolution of repeated DNA sequences by unequal crossover.

Authors:  G P Smith
Journal:  Science       Date:  1976-02-13       Impact factor: 47.728

6.  The evolution and sequence comparison of two recently diverged mouse chromosomal beta--globin genes.

Authors:  D A Konkel; J V Maizel; P Leder
Journal:  Cell       Date:  1979-11       Impact factor: 41.582

7.  Why genes in pieces?

Authors:  W Gilbert
Journal:  Nature       Date:  1978-02-09       Impact factor: 49.962

8.  The DNA sequence of Bombyx mori fibroin gene including the 5' flanking, mRNA coding, entire intervening and fibroin protein coding regions.

Authors:  Y Tsujimoto; Y Suzuki
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

9.  The structure and evolution of the two nonallelic rat preproinsulin genes.

Authors:  P Lomedico; N Rosenthal; A Efstratidadis; W Gilbert; R Kolodner; R Tizard
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

10.  Chicken ovalbumin contains an internal signal sequence.

Authors:  V R Lingappa; J R Lingappa; G Blobel
Journal:  Nature       Date:  1979-09-13       Impact factor: 49.962

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  36 in total

1.  Statistical analysis and prediction of the exonic structure of human genes.

Authors:  M S Gelfand
Journal:  J Mol Evol       Date:  1992-09       Impact factor: 2.395

2.  Selection of splice sites in pre-mRNAs with short internal exons.

Authors:  Z Dominski; R Kole
Journal:  Mol Cell Biol       Date:  1991-12       Impact factor: 4.272

3.  Characterization of the gene encoding the hemocyanin subunit e from the tarantula Eurypelma californicum.

Authors:  W Voll; R Voit
Journal:  Proc Natl Acad Sci U S A       Date:  1990-07       Impact factor: 11.205

4.  Exon definition may facilitate splice site selection in RNAs with multiple exons.

Authors:  B L Robberson; G J Cote; S M Berget
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

Review 5.  A survey on intron and exon lengths.

Authors:  J D Hawkins
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

6.  Do exons code for structural or functional units in proteins?

Authors:  T W Traut
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

7.  Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes, and its implications.

Authors:  P Senapathy
Journal:  Proc Natl Acad Sci U S A       Date:  1986-04       Impact factor: 11.205

8.  The complete structure of the rat thyroglobulin gene.

Authors:  A M Musti; E V Avvedimento; C Polistina; V M Ursini; S Obici; L Nitsch; S Cocozza; R Di Lauro
Journal:  Proc Natl Acad Sci U S A       Date:  1986-01       Impact factor: 11.205

9.  Origin of noncoding DNA sequences: molecular fossils of genome evolution.

Authors:  H Naora; K Miyahara; R N Curnow
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

10.  The structure of the human tissue-type plasminogen activator gene: correlation of intron and exon structures to functional and structural domains.

Authors:  T Ny; F Elgh; B Lund
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205

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