Literature DB >> 6947248

General solution to the inverse problem of the differential equation of the ultracentrifuge.

G P Todd, R H Haschemeyer.   

Abstract

Whenever experimental data can be simulated according to a model of the physical process, values of physical parameters in the model can be determined from experimental data by use of a nonlinear least-squares algorithm. We have used this principle to obtain a general procedure for evaluating molecular parameters of solutes redistributing in the ultracentrifuge that uses time-dependent concentration, concentration-difference, or concentration-gradient data. The method gives the parameter values that minimize the sum of the squared differences between experimental data and simulated data calculated from numerical solutions to the differential equation of the ultracentrifuge.

Mesh:

Year:  1981        PMID: 6947248      PMCID: PMC349125          DOI: 10.1073/pnas.78.11.6739

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations.

Authors:  J M Claverie; H Dreux; R Cohen
Journal:  Biopolymers       Date:  1975-08       Impact factor: 2.505

2.  Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation--theory and extensions of its validity range.

Authors:  R Cohen; J M Claverie
Journal:  Biopolymers       Date:  1975-08       Impact factor: 2.505

3.  Sedimentation of generalized systems of interacting particles. III. Concentration-dependent sedimentation and extension to other transport methods.

Authors:  J M Claverie
Journal:  Biopolymers       Date:  1976-05       Impact factor: 2.505

Review 4.  Fitting nonlinear models to data.

Authors:  R I Jennrich; M L Ralston
Journal:  Annu Rev Biophys Bioeng       Date:  1979
  4 in total
  10 in total

1.  Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA.

Authors:  Tetsuya Mori; Sergei V Saveliev; Yao Xu; Walter F Stafford; Michael M Cox; Ross B Inman; Carl H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

2.  Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications.

Authors:  Mohammed Terrak; Guanming Wu; Walter F Stafford; Renne C Lu; Roberto Dominguez
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

3.  Mapping the Deltex-binding surface on the notch ankyrin domain using analytical ultracentrifugation.

Authors:  Andrea Gayle Allgood; Doug Barrick
Journal:  J Mol Biol       Date:  2011-10-06       Impact factor: 5.469

4.  Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation.

Authors:  Weiming Cao; Borries Demeler
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

5.  Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution for multicomponent reacting systems.

Authors:  Weiming Cao; Borries Demeler
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

6.  Determination of molecular parameters by fitting sedimentation data to finite-element solutions of the Lamm equation.

Authors:  B Demeler; H Saber
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

7.  Identification and interpretation of complexity in sedimentation velocity boundaries.

Authors:  B Demeler; H Saber; J C Hansen
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

Review 8.  Allowance for boundary sharpening in the determination of diffusion coefficients by sedimentation velocity: a historical perspective.

Authors:  Donald J Winzor; David J Scott
Journal:  Biophys Rev       Date:  2018-01-27

9.  A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape.

Authors:  Emre Brookes; Weiming Cao; Borries Demeler
Journal:  Eur Biophys J       Date:  2009-02-27       Impact factor: 1.733

10.  Analysis of nonideality: insights from high concentration simulations of sedimentation velocity data.

Authors:  J J Correia; R T Wright; P J Sherwood; W F Stafford
Journal:  Eur Biophys J       Date:  2020-11-06       Impact factor: 1.733

  10 in total

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