Literature DB >> 18390609

Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution for multicomponent reacting systems.

Weiming Cao1, Borries Demeler.   

Abstract

We describe an extension of the adaptive space-time finite element method (ASTFEM) used in the solution of the Lamm equation to the case of multicomponent reacting systems. We use an operator splitting technique to decouple the sedimentation-diffusion process from the reaction process. The former is solved with an ASTFEM approach based on the Petrov-Galerkin method and on adaptive moving grids, and the latter is solved with the implicit midpoint Euler's method. Our solution can effectively eliminate the sedimentation errors for each component or species involved in the reaction, and it is free from oscillation near the cell bottom. It offers second-order accuracy, and guarantees conservation of mass without any additional postprocessing, and it permits modeling of multicomponent, equilibrating systems where the reaction rate can be kinetically controlled between an instantaneous reaction and a noninteracting mixture. The proposed ASTFEM solution provides improved efficiency and accuracy compared to classical approaches, especially when medium-sized and large molecules are modeled.

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Year:  2008        PMID: 18390609      PMCID: PMC2426643          DOI: 10.1529/biophysj.107.123950

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  7 in total

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4.  Analysis of heterologous interacting systems by sedimentation velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants.

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5.  Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation.

Authors:  Weiming Cao; Borries Demeler
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

6.  Sedimentation analysis of noninteracting and self-associating solutes using numerical solutions to the Lamm equation.

Authors:  P Schuck
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

7.  General solution to the inverse problem of the differential equation of the ultracentrifuge.

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Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

  7 in total
  26 in total

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