Literature DB >> 8994626

Identification and interpretation of complexity in sedimentation velocity boundaries.

B Demeler1, H Saber, J C Hansen.   

Abstract

Synthetic sedimentation velocity boundaries were generated using finite-element solutions to the original and modified forms of the Lamm equation. Situations modeled included ideal single- and multicomponent samples, concentration-dependent samples, noninteracting multicomponent samples, and reversibly self-associating samples. Synthetic boundaries subsequently were analyzed using the method of van Holde and Weischet, and results were compared against known input parameters. Results indicate that this analytical method provides rigorous diagnostics for virtually every type of sample complexity encountered experimentally. Accordingly, both the power and utility of sedimentation velocity experiments have been significantly expanded.

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Year:  1997        PMID: 8994626      PMCID: PMC1184330          DOI: 10.1016/S0006-3495(97)78680-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  9 in total

1.  Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations.

Authors:  J M Claverie; H Dreux; R Cohen
Journal:  Biopolymers       Date:  1975-08       Impact factor: 2.505

2.  Numerical study of the Johnston-Ogston effect in two-component systems.

Authors:  J J Correia; M L Johnson; G H Weiss; D A Yphantis
Journal:  Biophys Chem       Date:  1976-07       Impact factor: 2.352

3.  Sedimentation in the ultracentrifuge and diffusion of macromolecules carrying electrical charges.

Authors:  H Eisenberg
Journal:  Biophys Chem       Date:  1976-07       Impact factor: 2.352

4.  Sedimentation of generalized systems of interacting particles. III. Concentration-dependent sedimentation and extension to other transport methods.

Authors:  J M Claverie
Journal:  Biopolymers       Date:  1976-05       Impact factor: 2.505

Review 5.  Defining the structure and stability of macromolecular assemblies in solution: the re-emergence of analytical ultracentrifugation as a practical tool.

Authors:  P Hensley
Journal:  Structure       Date:  1996-04-15       Impact factor: 5.006

Review 6.  Analytical ultracentrifugation of complex macromolecular systems.

Authors:  J C Hansen; J Lebowitz; B Demeler
Journal:  Biochemistry       Date:  1994-11-15       Impact factor: 3.162

7.  General solution to the inverse problem of the differential equation of the ultracentrifuge.

Authors:  G P Todd; R H Haschemeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

8.  Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques.

Authors:  M L Johnson; J J Correia; D A Yphantis; H R Halvorson
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

9.  Formation and stability of higher order chromatin structures. Contributions of the histone octamer.

Authors:  P M Schwarz; J C Hansen
Journal:  J Biol Chem       Date:  1994-06-10       Impact factor: 5.157

  9 in total
  49 in total

1.  Direct sedimentation analysis of interference optical data in analytical ultracentrifugation.

Authors:  P Schuck; B Demeler
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.

Authors:  Peter Schuck; Matthew A Perugini; Noreen R Gonzales; Geoffrey J Howlett; Dieter Schubert
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Self-assembly properties of a model RING domain.

Authors:  Alex Kentsis; Ronald E Gordon; Katherine L B Borden
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

4.  Flipping a genetic switch by subunit exchange.

Authors:  L J Lambert; V Schirf; B Demeler; M Cadene; M H Werner
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

5.  Complex behavior in solution of homodimeric SecA.

Authors:  Ronald L Woodbury; Simon J S Hardy; Linda L Randall
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

Review 6.  Modern analytical ultracentrifugation in protein science: a tutorial review.

Authors:  Jacob Lebowitz; Marc S Lewis; Peter Schuck
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

7.  Sites of interaction between SecA and the chaperone SecB, two proteins involved in export.

Authors:  Linda L Randall; Jennine M Crane; Gseping Liu; Simon J S Hardy
Journal:  Protein Sci       Date:  2004-03-09       Impact factor: 6.725

8.  Trimeric structure for an essential protein in L1 retrotransposition.

Authors:  Sandra L Martin; Dan Branciforte; David Keller; David L Bain
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

9.  Direct identification of the site of binding on the chaperone SecB for the amino terminus of the translocon motor SecA.

Authors:  Linda L Randall; Michael T Henzl
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

10.  Sedimentation velocity ultracentrifugation analysis for hydrodynamic characterization of G-quadruplex structures.

Authors:  Nichola C Garbett; Chongkham S Mekmaysy; Jonathan B Chaires
Journal:  Methods Mol Biol       Date:  2010
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