Literature DB >> 29380276

Allowance for boundary sharpening in the determination of diffusion coefficients by sedimentation velocity: a historical perspective.

Donald J Winzor1, David J Scott2,3.   

Abstract

This review summarizes endeavors undertaken in the middle of last century to employ the Lamm equation for quantitative analysis of boundary spreading in sedimentation velocity experiments on globular proteins, thereby illustrating the ingenuity required to achieve that goal in an era when an approximate analytical solution of that nonlinear differential equation of second order provided the only means for its application. Application of procedures based on that approximate solution to simulated sedimentation velocity distributions has revealed a slight disparity (about 3%) between returned and input values of the diffusion coefficient-a discrepancy comparable with that of estimates obtained by current simulative analyses based on numerical solution of the Lamm equation. Although the massive technological developments in the gathering and treatment of sedimentation velocity data over the past three to four decades have changed dramatically the manner in which boundary spreading is analyzed, they have not led to any significant improvement in the accuracy of the diffusion coefficient thereby deduced.

Entities:  

Keywords:  Analytical centrifugation; Boundary spreading; Concentration dependence; Diffusion coefficient; Sedimentation coefficient; Sedimentation velocity

Year:  2018        PMID: 29380276      PMCID: PMC5803177          DOI: 10.1007/s12551-017-0384-1

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  27 in total

1.  Direct sedimentation analysis of interference optical data in analytical ultracentrifugation.

Authors:  P Schuck; B Demeler
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations.

Authors:  J M Claverie; H Dreux; R Cohen
Journal:  Biopolymers       Date:  1975-08       Impact factor: 2.505

3.  Physicochemical studies on ovalbumin. 4. Characterization of an iodine-modified derivative by electrophoresis and sedimentation.

Authors:  J M CREETH; D J WINZOR
Journal:  Biochem J       Date:  1962-06       Impact factor: 3.857

4.  The use of the Gouy diffusiometer with dilute protein solutions; an assessment of the accuracy of the method.

Authors:  J M CREETH
Journal:  Biochem J       Date:  1952-04       Impact factor: 3.857

5.  Allowance for radial dilution in evaluating the concentration dependence of sedimentation coefficients for globular proteins.

Authors:  Trushar R Patel; Donald J Winzor; David J Scott
Journal:  Eur Biophys J       Date:  2017-10-04       Impact factor: 1.733

6.  General solution to the inverse problem of the differential equation of the ultracentrifuge.

Authors:  G P Todd; R H Haschemeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

7.  Molecular mass determination by sedimentation velocity experiments and direct fitting of the concentration profiles.

Authors:  J Behlke; O Ristau
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

8.  Limitations of the ultracentrifugal approach for measuring the effective net charge of a macroion.

Authors:  Donald J Winzor; Lyle E Carrington; Stephen E Harding
Journal:  Anal Biochem       Date:  2004-10-01       Impact factor: 3.365

9.  Extent of charge screening in aqueous polysaccharide solutions.

Authors:  Donald J Winzor; Lyle E Carrington; Marcin Deszczynski; Stephen E Harding
Journal:  Biomacromolecules       Date:  2004 Nov-Dec       Impact factor: 6.988

10.  Concentration dependence of translational diffusion coefficients for globular proteins.

Authors:  David J Scott; Stephen E Harding; Donald J Winzor
Journal:  Analyst       Date:  2014-12-07       Impact factor: 4.616

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  2 in total

Review 1.  Quantifying the concentration dependence of sedimentation coefficients for globular macromolecules: a continuing age-old problem.

Authors:  Donald J Winzor; Vlad Dinu; David J Scott; Stephen E Harding
Journal:  Biophys Rev       Date:  2021-04-10

2.  Measuring Ultra-Weak Protein Self-Association by Non-ideal Sedimentation Velocity.

Authors:  Sumit K Chaturvedi; Vatsala Sagar; Huaying Zhao; Graeme Wistow; Peter Schuck
Journal:  J Am Chem Soc       Date:  2019-02-06       Impact factor: 15.419

  2 in total

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