Literature DB >> 673860

Theoretical melting profiles and denaturation maps of DNA with known sequence: fdDNA.

A V Vologodskii, M D Frank-Kamenetskii.   

Abstract

Differential melting profiles and denaturation maps are calculated for fdDNA whose sequence of nucleotides has been determined recently. The melting profiles for the total DNA and a number of its restriction fragments are compared with experimental data taken from literature. The comparison enables one to correlate a number of peaks on experimental melting profiles with the melting out of concrete regions of the nucleotide sequence. For three fragments very strong end effects are demonstrated on both theoretical and experimental profiles. These anomalous end effects are shown to be connected with a region highly enriched with AT-pairs. A possible influence of the heterogeneity of stacking interaction on the results obtained is discussed in detail.

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Year:  1978        PMID： 673860      PMCID： PMC342184          DOI： 10.1093/nar/5.7.2547

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  6 in total

1.  Long range homogeneity of physical stability in double-stranded DNA.

Authors:  A Wada; H Tachibana; O Gotoh; M Takanami
Journal:  Nature       Date:  1976-09-30       Impact factor: 49.962

2.  Nucleotide sequence of bacteriophage phi X174 DNA.

Authors:  F Sanger; G M Air; B G Barrell; N L Brown; A R Coulson; C A Fiddes; C A Hutchison; P M Slocombe; M Smith
Journal:  Nature       Date:  1977-02-24       Impact factor: 49.962

3.  Direct comparison of theoretical and experimental melting profiles for RF II phiX174 DNA.

Authors:  Y L Lyubchenko; A V Vologodskii; M D Frank-Kamenetskii
Journal:  Nature       Date:  1978-01-05       Impact factor: 49.962

4.  Location of the cooperative melting regions in bacteriophage fd DNA.

Authors:  H Tachibana; A Wada; O Gotoh; M Takanami
Journal:  Biochim Biophys Acta       Date:  1978-02-16

5.  Theory of DNA melting curves.

Authors:  M Fixman; J J Freire
Journal:  Biopolymers       Date:  1977-12       Impact factor: 2.505

6.  Helix coil transitions of d(A)n-d(T)n, d(A-T)n-d(A-T)n, and d(A-A-T)n-d(A-T-T)n; evaluation of parameters governing DNA stability.

Authors:  A L Oliver; R M Wartell; R L Ratliff
Journal:  Biopolymers       Date:  1977-05       Impact factor: 2.505
  6 in total
  9 in total

1.  DNA stretching as a probe for nucleic acid interactions: Reply to Comments on "Biophysical characterization of DNA binding from single molecule force measurements" by Kathy R. Chaurasiya, Thayaparan Paramanathan, Micah J. McCauley, Mark C. Williams.

Authors:  Micah J McCauley; Kathy R Chaurasiya; Thayaparan Paramanathan; Ioulia Rouzina; Mark C Williams
Journal:  Phys Life Rev       Date:  2010-09-01       Impact factor: 11.025

2.  Fluctuations in superhelical DNA.

Authors:  A V Vologodskii; A V Lukashin; V V Anshelevich; M D Frank-Kamenetskii
Journal:  Nucleic Acids Res       Date:  1979-03       Impact factor: 16.971

3.  Helix stability and the mechanism of cruciform extrusion in supercoiled DNA molecules.

Authors:  K M Sullivan; D M Lilley
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

4.  A comparison of experimental and theoretical melting maps for replicative form of phi X174 DNA.

Authors:  V I Lyamichev; A S Borovik
Journal:  Nucleic Acids Res       Date:  1982-03-25       Impact factor: 16.971

5.  Equilibrium melting of plasmid ColE1 DNA: electron-microscopic visualization.

Authors:  A S Borovik; Y A Kalambet; Y L Lyubchenko; V T Shitov; E I Golovanov
Journal:  Nucleic Acids Res       Date:  1980-09-25       Impact factor: 16.971

6.  A study of the reversibility of helix-coil transition in DNA.

Authors:  M P Perelroyzen; V I Lyamichev; A V Vologodskii
Journal:  Nucleic Acids Res       Date:  1981-08-25       Impact factor: 16.971

7.  Nucleotide sequence of bacteriophage fd DNA.

Authors:  E Beck; R Sommer; E A Auerswald; C Kurz; B Zink; G Osterburg; H Schaller; K Sugimoto; H Sugisaki; T Okamoto; M Takanami
Journal:  Nucleic Acids Res       Date:  1978-12       Impact factor: 16.971

8.  Energy landscapes of dynamic ensembles of rolling triplet repeat bulge loops: implications for DNA expansion associated with disease states.

Authors:  Jens Völker; Vera Gindikin; Horst H Klump; G Eric Plum; Kenneth J Breslauer
Journal:  J Am Chem Soc       Date:  2012-03-23       Impact factor: 15.419

9.  Superhelical duplex destabilization and the recombination position effect.

Authors:  Cheryl L Sershen; Joshua C Mell; Sally M Madden; Craig J Benham
Journal:  PLoS One       Date:  2011-06-09       Impact factor: 3.240
  9 in total

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