Literature DB >> 6359065

Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA.

G J Olsen, R McCarroll, M L Sogin.   

Abstract

We have used comparative analyses of prokaryotic and eukaryotic small subunit ribosomal RNAs to deduce a secondary structure for the Dictyostelium discoideum 18S rRNA. Most of the duplex regions are evolutionarily conserved in all organisms. We have taken advantage of the variation to the D. discoideum sequence (relative to the yeast and frog 19S rRNAs) to identify additional helical regions which are common to the eukaryotic 18S rRNAs.

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Year:  1983        PMID： 6359065      PMCID： PMC326558          DOI： 10.1093/nar/11.22.8037

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  30 in total

1.  Binding sites for ribosomal proteins S8 and S15 in the 16 S RNA of Escherichia coli.

Authors:  R A Zimmermann; K Singh-Bergmann
Journal:  Biochim Biophys Acta       Date:  1979-07-26

2.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

3.  [Nucleotide sequence of the gene for the mitochondrial 15S ribosomal RNA of yeast].

Authors:  F Sor; H Fukuhara
Journal:  C R Seances Acad Sci D       Date:  1980-12-08

4.  Sequence of the chloroplast 16S rRNA gene and its surrounding regions of Chlamydomonas reinhardii.

Authors:  M Dron; M Rahire; J D Rochaix
Journal:  Nucleic Acids Res       Date:  1982-12-11       Impact factor: 16.971

5.  The sequence of the 5.8 S ribosomal RNA of the crustacean Artemia salina. With a proposal for a general secondary structure model for 5.8 S ribosomal RNA.

Authors:  D Ursi; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1982-06-11       Impact factor: 16.971

6.  Evolution of rRNA and origin of mitochondria.

Authors:  H Küntzel; H G Köchel
Journal:  Nature       Date:  1981-10-29       Impact factor: 49.962

7.  Chemical modification studies and the secondary structure of HeLa cell 5.8S rRNA.

Authors:  J M Kelly; B E Maden
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

8.  The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae.

Authors:  P M Rubtsov; M M Musakhanov; V M Zakharyev; A S Krayev; K G Skryabin; A A Bayev
Journal:  Nucleic Acids Res       Date:  1980-12-11       Impact factor: 16.971

9.  Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.

Authors:  R Gupta; J M Lanter; C R Woese
Journal:  Science       Date:  1983-08-12       Impact factor: 47.728

10.  Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence.

Authors:  M Salim; B E Maden
Journal:  Nature       Date:  1981-05-21       Impact factor: 49.962
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  20 in total

Review 1.  An overview of the secondary structure of the V4 region of eukaryotic small-subunit ribosomal RNA.

Authors:  D L Nickrent; M L Sargent
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

2.  Compilation of small ribosomal subunit RNA sequences.

Authors:  E Huysmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  1986       Impact factor: 16.971

3.  Primary structure of the Paramecium tetraurelia small-subunit rRNA coding region: phylogenetic relationships within the Ciliophora.

Authors:  M L Sogin; H J Elwood
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

4.  The human 18S ribosomal RNA gene: evolution and stability.

Authors:  I L Gonzalez; R D Schmickel
Journal:  Am J Hum Genet       Date:  1986-04       Impact factor: 11.025

5.  Compilation of small ribosomal subunit RNA sequences.

Authors:  E Dams; L Hendriks; Y Van de Peer; J M Neefs; G Smits; I Vandenbempt; R De Wachter
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

Review 6.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

7.  The rDNA of C. elegans: sequence and structure.

Authors:  R E Ellis; J E Sulston; A R Coulson
Journal:  Nucleic Acids Res       Date:  1986-03-11       Impact factor: 16.971

8.  The complete nucleotide sequence of a rice 17S rRNA gene.

Authors:  F Takaiwa; K Oono; M Sugiura
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

9.  Xenopus laevis 18S ribosomal RNA: experimental determination of secondary structural elements, and locations of methyl groups in the secondary structure model.

Authors:  J Atmadja; R Brimacombe; B E Maden
Journal:  Nucleic Acids Res       Date:  1984-03-26       Impact factor: 16.971

10.  Sequence analysis of the transcribed and 5' non-transcribed regions of the ribosomal RNA gene in Dictyostelium discoideum.

Authors:  T Ozaki; Y Hoshikawa; Y Iida; M Iwabuchi
Journal:  Nucleic Acids Res       Date:  1984-05-25       Impact factor: 16.971
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