Literature DB >> 6296784

Sequence of the chloroplast 16S rRNA gene and its surrounding regions of Chlamydomonas reinhardii.

M Dron, M Rahire, J D Rochaix.   

Abstract

The sequence of a 2 kb DNA fragment containing the chloroplast 16S ribosomal RNA gene from Chlamydomonas reinhardii and its flanking regions has been determined. The algal 16S rRNA sequence (1475 nucleotides) and secondary structure are highly related to those found in bacteria and in the chloroplasts of higher plants. In contrast, the flanking regions are very different. In C. reinhardii the 16S rRNA gene is surrounded by AT rich segments of about 180 bases, which are followed by a long stretch of complementary bases separated from each other by 1833 nucleotides. It is likely that these structures play an important role in the folding and processing of the precursor of 16S rRNA. The primary and secondary structures of the binding sites of two ribosomal proteins in the 16SrRNAs of E. coli and C. reinhardii are considerably related.

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Year:  1982        PMID： 6296784      PMCID： PMC327033          DOI： 10.1093/nar/10.23.7609

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  22 in total

1.  Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids.

Authors:  A J Berk; P A Sharp
Journal:  Cell       Date:  1977-11       Impact factor: 41.582

2.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

3.  Secondary structure of 16S ribosomal RNA.

Authors:  H F Noller; C R Woese
Journal:  Science       Date:  1981-04-24       Impact factor: 47.728

4.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

5.  Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.

Authors:  C Zwieb; C Glotz; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1981-08-11       Impact factor: 16.971

6.  Extensive sequence homology in the DNA coding for elongation factor Tu from Escherichia coli and the Chlamydomonas reinhardtii chloroplast.

Authors:  J C Watson; S J Surzycki
Journal:  Proc Natl Acad Sci U S A       Date:  1982-04       Impact factor: 11.205

7.  Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.

Authors:  F Bolivar; R L Rodriguez; P J Greene; M C Betlach; H L Heyneker; H W Boyer; J H Crosa; S Falkow
Journal:  Gene       Date:  1977       Impact factor: 3.688

8.  Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.

Authors:  P Stiegler; P Carbon; M Zuker; J P Ebel; C Ehresmann
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

9.  A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits.

Authors:  P Stiegler; P Carbon; J P Ebel; C Ehresmann
Journal:  Eur J Biochem       Date:  1981-12

10.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.

Authors:  J Shine; L Dalgarno
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205
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  51 in total

1.  A role for initiation codon context in chloroplast translation.

Authors:  D Esposito; A J Hicks; D B Stern
Journal:  Plant Cell       Date:  2001-10       Impact factor: 11.277

2.  A 16 kb small single-copy region separates the plastid DNA inverted repeat of the unicellular red alga Cyanidium caldarium: physical mapping of the IR-flanking regions and nucleotide sequences of the psbD-psbC, rps16, 5S rRNA and rpl21 genes.

Authors:  U Maid; K Zetsche
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

Review 3.  Compilation of small ribosomal subunit RNA sequences.

Authors:  J M Neefs; Y Van de Peer; P De Rijk; A Goris; R De Wachter
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

4.  Chloroplast and nuclear genomes of Chlamydomonas reinhardtii share homology with Escherichia coli genes for DNA replication, repair and transcription.

Authors:  T Oppermann; T H Hong; S J Surzycki
Journal:  Curr Genet       Date:  1989-01       Impact factor: 3.886

5.  Compilation of small ribosomal subunit RNA sequences.

Authors:  J M Neefs; Y Van de Peer; L Hendriks; R De Wachter
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

6.  Plastid DNA from Pyrenomonas salina (Cryptophyceae): physical map, genes, and evolutionary implications.

Authors:  M Maerz; J Wolters; C J Hofmann; P Sitte; U G Maier
Journal:  Curr Genet       Date:  1992-01       Impact factor: 3.886

7.  A Nuclear Mutation That Affects the 3[prime] Processing of Several mRNAs in Chlamydomonas Chloroplasts.

Authors:  H. Levy; K. L. Kindle; D. B. Stern
Journal:  Plant Cell       Date:  1997-05       Impact factor: 11.277

8.  Two group I introns with long internal open reading frames in the chloroplast psbA gene of Chlamydomonas moewusii.

Authors:  M Turmel; J Boulanger; C Lemieux
Journal:  Nucleic Acids Res       Date:  1989-05-25       Impact factor: 16.971

9.  The chloroplast atpA gene cluster in Chlamydomonas reinhardtii. Functional analysis of a polycistronic transcription unit.

Authors:  D Drapier; H Suzuki; H Levy; B Rimbault; K L Kindle; D B Stern; F A Wollman
Journal:  Plant Physiol       Date:  1998-06       Impact factor: 8.340

10.  Evolution of fragmented mitochondrial ribosomal RNA genes in Chlamydomonas.

Authors:  E M Denovan-Wright; D Sankoff; D F Spencer; R W Lee
Journal:  J Mol Evol       Date:  1996-04       Impact factor: 2.395
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