Literature DB >> 6322110

The Bam repeats of the mouse genome belong in several superfamilies the longest of which is over 9 kb in size.

M Meunier-Rotival, G Bernardi.   

Abstract

Mouse DNA contains two equally abundant, homologous subfamilies of MspI 3.6 and 5 kb repeated fragments. The first subfamily corresponds to the previously described (1) Bam 4 kb repeats, the second one to Bam repeated fragments of higher molecular weight. These subfamilies account for the vast majority of long Bam repeats and are linked with contiguous short Bam 0.5 kb repeats. A minority of these composite Bam repeats extend, on the 0.5 kb side, into R repeats. In turn, a fraction of the composite Bam/R repeats extend further, for at least 3 kb, into other repeated sequences contiguous to the R repeats. The long Bam repeats belong, therefore, in at least three superfamilies of repeats, the longest one being over 9 kb in size. Some general properties of these superfamilies are discussed.

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Year:  1984        PMID: 6322110      PMCID: PMC318601          DOI: 10.1093/nar/12.3.1593

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  27 in total

1.  Highly regular arrangement of a restriction-nuclease-sensitive site in rodent satellite DNAs.

Authors:  W Hörz; I Hess; H G Zachau
Journal:  Eur J Biochem       Date:  1974-06-15

2.  Organization and evolutionary progress of a dispersed repetitive family of sequences in widely separated rodent genomes.

Authors:  S D Brown; G Dover
Journal:  J Mol Biol       Date:  1981-08-25       Impact factor: 5.469

3.  A family of moderately repetitive sequences in mouse DNA.

Authors:  S M Cheng; C L Schildkraut
Journal:  Nucleic Acids Res       Date:  1980-09-25       Impact factor: 16.971

4.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

5.  Locations of three repetitive sequence families found in BALB/c adult beta-globin clones.

Authors:  N L Haigwood; C L Jahn; C A Hutchison; M H Edgell
Journal:  Nucleic Acids Res       Date:  1981-03-11       Impact factor: 16.971

6.  Structure and organization of the highly repeated and interspersed 1.3 kb EcoRI-Bg1II sequence family in mice.

Authors:  R Heller; N Arnheim
Journal:  Nucleic Acids Res       Date:  1980-11-11       Impact factor: 16.971

7.  Intracisternal A-particle genes: identification in the genome of Mus musculus and comparison of multiple isolates from a mouse gene library.

Authors:  K K Lueders; E L Kuff
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

8.  Novel classes of mouse repeated DNAs.

Authors:  L Manuelidis
Journal:  Nucleic Acids Res       Date:  1980-08-11       Impact factor: 16.971

9.  The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity.

Authors:  G Cuny; P Soriano; G Macaya; G Bernardi
Journal:  Eur J Biochem       Date:  1981-04

10.  The scattered distribution of actin genes in the mouse and human genomes.

Authors:  P Soriano; P Szabo; G Bernardi
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  13 in total

1.  Nucleotide sequence analysis of a mouse Y chromosomal DNA fragment containing Bkm and LINE elements.

Authors:  Y Nishioka; B M Dolan; A Fiorellino; V F Prado
Journal:  Genetica       Date:  1992       Impact factor: 1.082

2.  Fluidity of the 350 bp tandemly repeated DNA family of Brassica nigra.

Authors:  S Harbinder; V Gupta; M Lakshmikumaran
Journal:  Plant Mol Biol       Date:  1992-04       Impact factor: 4.076

3.  Structure of a processed gene of mouse cytoplasmic gamma-actin transposed into a BAM5 sequence: insertion has created 13 base-pair direct repeats.

Authors:  K Tokunaga; K Yoda; S Sakiyama
Journal:  Nucleic Acids Res       Date:  1985-05-10       Impact factor: 16.971

4.  Comparison of genomic fragment and clone sequences within a long interspersed repeated sequence of the mouse genome.

Authors:  D L Vizard; J Yarsa
Journal:  Nucleic Acids Res       Date:  1985-01-25       Impact factor: 16.971

5.  Transposon-like sequences in extrachromosomal circular DNA from mouse thymocytes.

Authors:  S Fujimoto; T Tsuda; M Toda; H Yamagishi
Journal:  Proc Natl Acad Sci U S A       Date:  1985-04       Impact factor: 11.205

6.  Conservation in the 5' region of the long interspersed mouse L1 repeat: implications of comparative sequence analysis.

Authors:  E Mottez; P K Rogan; L Manuelidis
Journal:  Nucleic Acids Res       Date:  1986-04-11       Impact factor: 16.971

7.  Transcription of the mouse dihydrofolate reductase gene proceeds unabated through seven polyadenylation sites and terminates near a region of repeated DNA.

Authors:  E G Frayne; E J Leys; G F Crouse; A G Hook; R E Kellems
Journal:  Mol Cell Biol       Date:  1984-12       Impact factor: 4.272

8.  Localization of the L1Md family of repeated sequences in the mouse albumin-alpha-fetoprotein gene complex.

Authors:  R Cooper; C E Herzog; M L Li; W F Zapisek; P R Hoyt; H Ratrie; J Papaconstantinou
Journal:  Nucleic Acids Res       Date:  1984-08-24       Impact factor: 16.971

9.  Structure of the highly repeated, long interspersed DNA family (LINE or L1Rn) of the rat.

Authors:  E D'Ambrosio; S D Waitzkin; F R Witney; A Salemme; A V Furano
Journal:  Mol Cell Biol       Date:  1986-02       Impact factor: 4.272

10.  Insertion of long interspersed repeated elements at the Igh (immunoglobulin heavy chain) and Mlvi-2 (Moloney leukemia virus integration 2) loci of rats.

Authors:  A Economou-Pachnis; M A Lohse; A V Furano; P N Tsichlis
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

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