Literature DB >> 7238506

The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity.

G Cuny, P Soriano, G Macaya, G Bernardi.   

Abstract

Main-band DNA from mammals and birds can be resolved by density gradient centrifugation techniques into three or four families of fragments of different dG + dC contents. These major DNA components are similar in their buoyant densities and relative amounts in all species tested and are observed in DNA preparations ranging in Mr from 2 X 10(6) to over 200 X 10(6). In the present work, the four major components of mouse and human DNAs were prepared and characterized in several basic properties: relative amounts, dG + dC contents, buoyant densities and compositional heterogeneity. The results obtained lead to the following conclusions: (a) the major DNA components of mouse and man form at least 85% and possibly the totality of the main bands of these DNAs; (b) they have very low compositional heterogeneities over a wide molecular weight range; (c) they derive from very large chromosomal DNA segments of fairly homogeneous base composition, for which the name 'isochores' is proposed. A comparison of the compositional heterogeneity of main-band DNAs from warm-blooded and cold-blooded vertebrates confirms our previous conclusion that these DNAs are characterized by a different sequence organization.

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Year:  1981        PMID: 7238506     DOI: 10.1111/j.1432-1033.1981.tb05227.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  52 in total

1.  Identification of the gene-richest bands in human prometaphase chromosomes.

Authors:  S Saccone; C Federico; I Solovei; M F Croquette; G Della Valle; G Bernardi
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  Gene density in the Giemsa bands of human chromosomes.

Authors:  C Federico; L Andreozzi; S Saccone; G Bernardi
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

3.  Using analytical ultracentrifugation to study compositional variation in vertebrate genomes.

Authors:  Oliver Clay; Christophe J Douady; Nicolas Carels; Sandrine Hughes; Giuseppe Bucciarelli; Giorgio Bernardi
Journal:  Eur Biophys J       Date:  2003-04-09       Impact factor: 1.733

4.  Compositional gene landscapes in vertebrates.

Authors:  Stéphane Cruveiller; Kamel Jabbari; Oliver Clay; Giorgio Bernardi
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

5.  IsoFinder: computational prediction of isochores in genome sequences.

Authors:  José L Oliver; Pedro Carpena; Michael Hackenberg; Pedro Bernaola-Galván
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

6.  Compositional transitions in the nuclear genomes of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

Review 7.  Chromosome bands, their chromatin flavors, and their functional features.

Authors:  G P Holmquist
Journal:  Am J Hum Genet       Date:  1992-07       Impact factor: 11.025

8.  Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates.

Authors:  Concetta Federico; Cinzia Scavo; Catia Daniela Cantarella; Salvatore Motta; Salvatore Saccone; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-01-11       Impact factor: 4.316

9.  Human chromosomal bands: nested structure, high-definition map and molecular basis.

Authors:  Maria Costantini; Oliver Clay; Concetta Federico; Salvatore Saccone; Fabio Auletta; Giorgio Bernardi
Journal:  Chromosoma       Date:  2006-10-28       Impact factor: 4.316

10.  The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes.

Authors:  P Soriano; M Meunier-Rotival; G Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

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