Literature DB >> 6320115

Generation of long read-through transcripts in vivo and in vitro by deletion of 3' termination and processing sequences in the human tRNAimet gene.

S Adeniyi-Jones, P H Romeo, M Zasloff.   

Abstract

The effects of 3' deletions of the coding and flanking regions of the human tRNAimet gene on its transcription and subsequent processing have been studied both in vitro and in vivo. We demonstrate that in the absence of the oligo T stop signal, polymerase III will read-through efficiently to the next available downstream stop signal. In mutations preserving the 3' terminal sequence of the coding region these read-through transcripts are efficiently processed, irrespective of their length and sequence by an endonucleolytic cleavage to yield both a mature tRNA and an intact trailer RNA. However, deletions involving the terminal regions up to +62 in the coding sequence produce an unprocessed co-transcript of tRNA and downstream sequences. Deletions further within the B promoter box abolish transcription. The use of these mutants as possible "portable" promoters is discussed.

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Year:  1984        PMID: 6320115      PMCID: PMC318559          DOI: 10.1093/nar/12.2.1101

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  33 in total

1.  A new method for the purification and identification of covalently closed circular DNA molcules.

Authors:  M Zasloff; G D Ginder; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1978-04       Impact factor: 16.971

2.  Deletion of the 3' half of the yeast tRNA-Leu3 gene does not abolish promotor function in vitro.

Authors:  G Carrara; G Di Segni; A Otsuka; G P Tocchini-Valentini
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

Review 3.  Transcription by RNA polymerase III.

Authors:  G Ciliberto; L Castagnoli; R Cortese
Journal:  Curr Top Dev Biol       Date:  1983       Impact factor: 4.897

4.  Transcription of eukaryotic tRNA genes in vitro. I. Analysis of control regions using a competition assay.

Authors:  S Sharp; T Dingermann; J Schaack; D DeFranco; D Söll
Journal:  J Biol Chem       Date:  1983-02-25       Impact factor: 5.157

5.  An E. coli gene coding for a protamine-like protein.

Authors:  S Altman; P Model; G H Dixon; N A Wosnick
Journal:  Cell       Date:  1981-11       Impact factor: 41.582

6.  A short 5' flanking region containing conserved sequences is required for silkworm alanine tRNA gene activity.

Authors:  D Larson; J Bradford-Wilcox; L S Young; K U Sprague
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

7.  5' flanking sequence signals are required for activity of silkworm alanine tRNA genes in homologous in vitro transcription systems.

Authors:  K U Sprague; D Larson; D Morton
Journal:  Cell       Date:  1980-11       Impact factor: 41.582

8.  Specific interactions of Saccharomyces cerevisiae proteins with a promoter region of eukaryotic tRNA genes.

Authors:  R Klemenz; D J Stillman; E P Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

9.  Nucleotide sequences in Xenopus 5S DNA required for transcription termination.

Authors:  D F Bogenhagen; D D Brown
Journal:  Cell       Date:  1981-04       Impact factor: 41.582

10.  Genetic analysis of the processing of a spliced tRNA.

Authors:  K Nishikura; J Kurjan; B D Hall; E M De Robertis
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  18 in total

1.  Significantly higher activity of a cytoplasmic hammerhead ribozyme than a corresponding nuclear counterpart: engineered tRNAs with an extended 3' end can be exported efficiently and specifically to the cytoplasm in mammalian cells.

Authors:  T Kuwabara; M Warashina; S Koseki; M Sano; J Ohkawa; K Nakayama; K Taira
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

Review 2.  La protein and its associated small nuclear and nucleolar precursor RNAs.

Authors:  Richard J Maraia; Robert V Intine
Journal:  Gene Expr       Date:  2002

3.  Cleavage specificity of chloroplast and nuclear tRNA 3'-processing nucleases.

Authors:  A Oommen; X Q Li; P Gegenheimer
Journal:  Mol Cell Biol       Date:  1992-02       Impact factor: 4.272

4.  Factors governing the activity in vivo of ribozymes transcribed by RNA polymerase III.

Authors:  S Koseki; T Tanabe; K Tani; S Asano; T Shioda; Y Nagai; T Shimada; J Ohkawa; K Taira
Journal:  J Virol       Date:  1999-03       Impact factor: 5.103

5.  A human tRNA(iMet) gene produces multiple transcripts.

Authors:  C L Vnencak-Jones; S Z Wahab; Z E Zehner; W M Holmes
Journal:  Mol Cell Biol       Date:  1987-11       Impact factor: 4.272

6.  Pathway of B1-Alu expression in microinjected oocytes: Xenopus laevis proteins associated with nuclear precursor and processed cytoplasmic RNAs.

Authors:  R Maraia; M Zasloff; P Plotz; S Adeniyi-Jones
Journal:  Mol Cell Biol       Date:  1988-10       Impact factor: 4.272

7.  Improved accumulation and activity of ribozymes expressed from a tRNA-based RNA polymerase III promoter.

Authors:  J D Thompson; D F Ayers; T A Malmstrom; T L McKenzie; L Ganousis; B M Chowrira; L Couture; D T Stinchcomb
Journal:  Nucleic Acids Res       Date:  1995-06-25       Impact factor: 16.971

8.  RNA polymerase III transcription in synthetic nuclei assembled in vitro from defined DNA templates.

Authors:  K S Ullman; D J Forbes
Journal:  Mol Cell Biol       Date:  1995-09       Impact factor: 4.272

9.  Endogenous expression of a high-affinity pseudoknot RNA aptamer suppresses replication of HIV-1.

Authors:  Laurent Chaloin; Maik Jörg Lehmann; Georg Sczakiel; Tobias Restle
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

10.  Transcription initiation and termination on Leishmania major chromosome 3.

Authors:  Santiago Martínez-Calvillo; Dan Nguyen; Kenneth Stuart; Peter J Myler
Journal:  Eukaryot Cell       Date:  2004-04
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