Literature DB >> 6310494

The genes coding for histone H3 and H4 in Neurospora crassa are unique and contain intervening sequences.

L P Woudt, A Pastink, A E Kempers-Veenstra, A E Jansen, W H Mager, R J Planta.   

Abstract

Sequences coding for histone H3 and H4 of Neurospora crassa could be identified in genomic digests with the use of the corresponding genes from sea urchin and X. laevis as hybridization probes. A 2.6 kb HindIII-generated N. crassa DNA fragment, showing homology with the heterologous histone H3-gene probes was cloned in a charon 21A vector. Using DNA from this clone as a homologous hybridization probe a 6.9 kb SalI-generated DNA fragment was isolated which in addition to the histone H3-gene also contains the gene coding for histone H4. Several lines of evidence demonstrate the presence of only a single histone H3- as well as a single histone H4-gene in N. crassa. The two genes are physically linked on the genome. DNA sequencing of the N. crassa histone H3- and H4-genes confirmed their identity and, in addition, revealed the presence of one short intron (67 bp) within the coding sequence of the H3-gene and even two introns (68 and 69 bp) within the H4-gene. The amino acid sequences of the N. crassa histones H3 and H4, as deduced from the DNA sequences, and those of the corresponding yeast histones differ only at a few positions. Much larger sequence differences, however, are observed at the DNA level, reflecting a diverging codon usage in the two lower eukaryotes.

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Year:  1983        PMID: 6310494      PMCID: PMC326282          DOI: 10.1093/nar/11.16.5347

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Covalent structure of the sea urchin histone H4.

Authors:  D Wouters-Tyrou; P Sautière; G Bisterte
Journal:  FEBS Lett       Date:  1976-06-01       Impact factor: 4.124

2.  The organization of the histone genes in Drosophila melanogaster: functional and evolutionary implications.

Authors:  R P Lifton; M L Goldberg; R W Karp; D S Hogness
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

3.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

4.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

5.  Screening lambdagt recombinant clones by hybridization to single plaques in situ.

Authors:  W D Benton; R W Davis
Journal:  Science       Date:  1977-04-08       Impact factor: 47.728

6.  Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.

Authors:  D B Clewell; D R Helinski
Journal:  Proc Natl Acad Sci U S A       Date:  1969-04       Impact factor: 11.205

7.  Genes and spacers of cloned sea urchin histone DNA analyzed by sequencing.

Authors:  W Schaffner; G Kunz; H Daetwyler; J Telford; H O Smith; M L Birnstiel
Journal:  Cell       Date:  1978-07       Impact factor: 41.582

8.  A method for the recovery of DNA from agarose gels.

Authors:  H F Tabak; R A Flavell
Journal:  Nucleic Acids Res       Date:  1978-07       Impact factor: 16.971

9.  Structure of the trifunctional trp-1 gene from Neurospora crassa and its aberrant expression in Escherichia coli.

Authors:  M G Schechtman; C Yanofsky
Journal:  J Mol Appl Genet       Date:  1983

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  65 in total

1.  An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.

Authors:  D Battogtokh; D K Asch; M E Case; J Arnold; H-B Schuttler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

2.  A comprehensive compilation and alignment of histones and histone genes.

Authors:  D Wells; C McBride
Journal:  Nucleic Acids Res       Date:  1989       Impact factor: 16.971

3.  Intron splicing: a conserved internal signal in introns of Drosophila pre-mRNAs.

Authors:  E B Keller; W A Noon
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

4.  First steps in eukaryogenesis: physical phenomena in the origin and evolution of chromosome structure.

Authors:  J Chela-Flores
Journal:  Orig Life Evol Biosph       Date:  1998-04       Impact factor: 1.950

5.  Codon usage in histone gene families of higher eukaryotes reflects functional rather than phylogenetic relationships.

Authors:  D Wells; W Bains; L Kedes
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

6.  Mild temperature shock affects transcription of yeast ribosomal protein genes as well as the stability of their mRNAs.

Authors:  M H Herruer; W H Mager; H A Raué; P Vreken; E Wilms; R J Planta
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

7.  Sequence and properties of the message encoding Tetrahymena hv1, a highly evolutionarily conserved histone H2A variant that is associated with active genes.

Authors:  E M White; D L Shapiro; C D Allis; M A Gorovsky
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

8.  Size and position of intervening sequences are critical for the splicing efficiency of pre-mRNA in the yeast Saccharomyces cerevisiae.

Authors:  F J Klinz; D Gallwitz
Journal:  Nucleic Acids Res       Date:  1985-06-11       Impact factor: 16.971

9.  Structure of the cutinase gene and detection of promoter activity in the 5'-flanking region by fungal transformation.

Authors:  C L Soliday; M B Dickman; P E Kolattukudy
Journal:  J Bacteriol       Date:  1989-04       Impact factor: 3.490

10.  Replacement variant histone genes contain intervening sequences.

Authors:  D Brush; J B Dodgson; O R Choi; P W Stevens; J D Engel
Journal:  Mol Cell Biol       Date:  1985-06       Impact factor: 4.272

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