Literature DB >> 6304623

Targeted random mutagenesis: the use of ambiguously synthesized oligonucleotides to mutagenize sequences immediately 5' of an ATG initiation codon.

M D Matteucci, H L Heyneker.   

Abstract

The nine base pairs immediately 5' of the initiation codon for the bovine growth hormone (BGH) structural gene have been mutagenized. The mutagenesis method employs the ligation of an ambiguously synthesized oligonucleotide duplex into a previously engineered gap in an expression plasmid for BGH. The mutation method, coupled with hybridization screening, is efficient at isolating 1 and 2 base pair changes within the targeted region. The E. coli cultures harboring the mutant plasmids were assayed for relative levels of BGH expression. The most notable result is the varied effect of substitution of G into the mRNA at various positions in this region.

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Year:  1983        PMID: 6304623      PMCID: PMC325952          DOI: 10.1093/nar/11.10.3113

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Local mutagenesis: a method for generating viral mutants with base substitutions in preselected regions of the viral genome.

Authors:  D Shortle; D Nathans
Journal:  Proc Natl Acad Sci U S A       Date:  1978-05       Impact factor: 11.205

2.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

3.  Direct expression in Escherichia coli of a DNA sequence coding for human growth hormone.

Authors:  D V Goeddel; H L Heyneker; T Hozumi; R Arentzen; K Itakura; D G Yansura; M J Ross; G Miozzari; R Crea; P H Seeburg
Journal:  Nature       Date:  1979-10-18       Impact factor: 49.962

4.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

5.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  Ribosomal protein S1 and polypeptide chain initiation in bacteria.

Authors:  W Szer; J M Hermoso; S Leffler
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

7.  A general method for maximizing the expression of a cloned gene.

Authors:  T M Roberts; R Kacich; M Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  1979-02       Impact factor: 11.205

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.

Authors:  J Shine; L Dalgarno
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

10.  Transfer of proteins across membranes. I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma.

Authors:  G Blobel; B Dobberstein
Journal:  J Cell Biol       Date:  1975-12       Impact factor: 10.539

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  31 in total

1.  Overproduction of SecA suppresses the export defect caused by a mutation in the gene encoding the Escherichia coli export chaperone secB.

Authors:  H A Cook; C A Kumamoto
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

2.  Optimizing doped libraries by using genetic algorithms.

Authors:  D Tomandl; A Schober; A Schwienhorst
Journal:  J Comput Aided Mol Des       Date:  1997-01       Impact factor: 3.686

Review 3.  High-expression of a target gene and high-stability of the plasmid.

Authors:  M Kobayashi; Y Kurusu; H Yukawa
Journal:  Appl Biochem Biotechnol       Date:  1991-02       Impact factor: 2.926

4.  A method for introducing random single point deletions in specific DNA target sequences using oligonucleotides.

Authors:  S S Ner; T C Atkinson; M Smith
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

5.  Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides.

Authors:  L J Jensen; K V Andersen; A Svendsen; T Kretzschmar
Journal:  Nucleic Acids Res       Date:  1998-02-01       Impact factor: 16.971

6.  The highly conserved U small nuclear RNA 3'-end formation signal is quite tolerant to mutation.

Authors:  R A Ach; A M Weiner
Journal:  Mol Cell Biol       Date:  1987-06       Impact factor: 4.272

7.  Generation of antibody activity from immunoglobulin polypeptide chains produced in Escherichia coli.

Authors:  S Cabilly; A D Riggs; H Pande; J E Shively; W E Holmes; M Rey; L J Perry; R Wetzel; H L Heyneker
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

8.  Promoters selected from random DNA sequences.

Authors:  M S Horwitz; L A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

9.  Introduction of restriction enzyme sites in protein-coding DNA sequences by site-specific mutagenesis not affecting the amino acid sequence: a computer program.

Authors:  R Arentzen; W C Ripka
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

10.  Secondary structure as primary determinant of the efficiency of ribosomal binding sites in Escherichia coli.

Authors:  A C Looman; J Bodlaender; M de Gruyter; A Vogelaar; P H van Knippenberg
Journal:  Nucleic Acids Res       Date:  1986-07-11       Impact factor: 16.971

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