Literature DB >> 6139279

Complete sequence of a eukaryotic regulatory gene.

J C Hubert, A Guyonvarch, B Kammerer, F Exinger, P Liljelund, F Lacroute.   

Abstract

Dihydroorotase, the third enzymatic activity of the pyrimidine pathway, is encoded in Saccharomyces cerevisiae by a single gene URA4, which is induced at the transcriptional level by accumulation of ureidosuccinic acid. A regulatory gene PPR2 (pyrimidine pathway regulatory 2) acting specifically on this step, has been characterized, cloned and sequenced. The main open reading frame is 384 nucleotides long and potentially codes for a basic protein, favoring a molecular mechanism involving direct binding of a regulatory protein to DNA. The short length of the PPR2 polypeptide chain and the presence of seven cysteine residues suggest that the active form of the protein is an oligomer assembled through disulphide bonds. An uninducible allele has been cloned and sequenced. The mutation corresponds to an A leads to T transversion changing a lysine triplet into an ochre codon. The uninducible phenotype of this mutant is completely suppressed by an ochre suppressor, strengthening the hypothesis that PPR2 acts on URA4 transcription through the synthesis of a regulatory protein.

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Year:  1983        PMID: 6139279      PMCID: PMC555411          DOI: 10.1002/j.1460-2075.1983.tb01702.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  12 in total

Review 1.  Suppressors in yeast.

Authors:  D C Hawthorne; U Leupold
Journal:  Curr Top Microbiol Immunol       Date:  1974       Impact factor: 4.291

2.  Plasmids carrying the yeast OMP decarboxylase structural and regulatory genes: transcription regulation in a foreign environment.

Authors:  R Losson; F Lacroute
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

3.  New M13 vectors for cloning.

Authors:  J Messing
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

4.  Transformation of yeast by a replicating hybrid plasmid.

Authors:  J D Beggs
Journal:  Nature       Date:  1978-09-14       Impact factor: 49.962

5.  Isolation of the yeast regulatory gene GAL4 and analysis of its dosage effects on the galactose/melibiose regulon.

Authors:  S A Johnston; J E Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

6.  Isolation and preliminary characterization of the GAL4 gene, a positive regulator of transcription in yeast.

Authors:  A Laughon; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

7.  Transformation of yeast.

Authors:  A Hinnen; J B Hicks; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  Cloning of a eukaryotic regulatory gene.

Authors:  R Losson; F Lacroute
Journal:  Mol Gen Genet       Date:  1981

10.  Isolation and characterization of the positive regulatory gene ADR1 from Saccharomyces cerevisiae.

Authors:  C L Denis; E T Young
Journal:  Mol Cell Biol       Date:  1983-03       Impact factor: 4.272

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  22 in total

Review 1.  Transcription elongation factor SII.

Authors:  M Wind; D Reines
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

2.  The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage.

Authors:  D Reines; P Ghanouni; Q Q Li; J Mote
Journal:  J Biol Chem       Date:  1992-08-05       Impact factor: 5.157

3.  Drosophila RNA polymerase II elongation factor DmS-II has homology to mouse S-II and sequence similarity to yeast PPR2.

Authors:  T K Marshall; H Guo; D H Price
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

4.  Evidence that the elongation factor TFIIS plays a role in transcription initiation at GAL1 in Saccharomyces cerevisiae.

Authors:  Donald M Prather; Erica Larschan; Fred Winston
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

5.  Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes.

Authors:  P M Sharp; T M Tuohy; K R Mosurski
Journal:  Nucleic Acids Res       Date:  1986-07-11       Impact factor: 16.971

Review 6.  Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae.

Authors:  Craig D Kaplan
Journal:  Biochim Biophys Acta       Date:  2012-09-26

Review 7.  Genetics of eukaryotic RNA polymerases I, II, and III.

Authors:  J Archambault; J D Friesen
Journal:  Microbiol Rev       Date:  1993-09

8.  Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition.

Authors:  Francisco Malagon; Amy H Tong; Brenda K Shafer; Jeffrey N Strathern
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

9.  Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability.

Authors:  Stefan Sigurdsson; A Barbara Dirac-Svejstrup; Jesper Q Svejstrup
Journal:  Mol Cell       Date:  2010-04-23       Impact factor: 17.970

10.  The critical cis-acting element required for IMD2 feedback regulation by GDP is a TATA box located 202 nucleotides upstream of the transcription start site.

Authors:  Mafalda Escobar-Henriques; Bertrand Daignan-Fornier; Martine A Collart
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

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