Literature DB >> 6115381

Spurious conformational transitions in proteins?

A Cooper.   

Abstract

Temperature-dependent dynamic processes in biological macromolecules can produce sharp and reversible transitions in spectroscopic properties that might be misinterpreted as evidence for thermally induced conformational changes. This provides a rational explanation for the paradoxical case of D-amino acid oxidase [D-amino-acid:oxygen oxidoreductase (deaminating), EC 1.4.3.3], for which a sharp fluorescence transition at 14 degrees C, not observed by sensitive calorimetry [Sturtevant, J. M. & Mateo, P. L. (1978) Proc. Natl. Acad. Sci. USA 75, 2584-2587], could be due to a dynamic quenching process of large activation energy, rather than a change in conformational state of the protein. Similar interpretations may be valid in other systems studied by experimental techniques that depend, directly or indirectly, on molecular relaxation processes.

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Year:  1981        PMID: 6115381      PMCID: PMC319607          DOI: 10.1073/pnas.78.6.3551

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Thermodynamic fluctuations in protein molecules.

Authors:  A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

2.  Proposed temperature-dependent conformational transition in D-amino acid oxidase: a differential scanning microcalorimetric study.

Authors:  J M Sturtevant; P L Mateo
Journal:  Proc Natl Acad Sci U S A       Date:  1978-06       Impact factor: 11.205

3.  Dynamics of folded proteins.

Authors:  J A McCammon; B R Gelin; M Karplus
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

4.  Dynamics of the aromatic amino acid residues in the globular conformation of the basic pancreatic trypsin inhibitor (BPTI). I. 1H NMR studies.

Authors:  G Wagner; A DeMarco; K Wüthrich
Journal:  Biophys Struct Mech       Date:  1976-08-23

5.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

6.  Kinetics of reversible denaturation of trypsin in water and water--ethanol mixtures.

Authors:  F M Pohl
Journal:  Eur J Biochem       Date:  1968-12

7.  Subnanosecond motions of tryptophan residues in proteins.

Authors:  I Munro; I Pecht; L Stryer
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

8.  Quenching of protein fluorescence by oxygen. Detection of structural fluctuations in proteins on the nanosecond time scale.

Authors:  J R Lakowicz; G Weber
Journal:  Biochemistry       Date:  1973-10-09       Impact factor: 3.162

9.  A temperature-dependent conformational change in D-amino acid oxidase and its effect on catalysis.

Authors:  V Massey; B Curti; H Ganther
Journal:  J Biol Chem       Date:  1966-05-25       Impact factor: 5.157

10.  Fluorescence energy transfer in the rapid-diffusion limit.

Authors:  D D Thomas; W F Carlsen; L Stryer
Journal:  Proc Natl Acad Sci U S A       Date:  1978-12       Impact factor: 11.205

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  3 in total

1.  A link between hinge-bending domain motions and the temperature dependence of catalysis in 3-isopropylmalate dehydrogenase.

Authors:  István Hajdú; András Szilágyi; József Kardos; Péter Závodszky
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

2.  Quenching by acrylamide and temperature of a fluorescent probe attached to the active site of ribonuclease.

Authors:  M Jullien; J R Garel; F Merola; J C Brochon
Journal:  Eur Biophys J       Date:  1986       Impact factor: 1.733

3.  Proteins related to the mouse L-cell major heat shock protein are synthesized in the absence of heat shock gene expression.

Authors:  D G Lowe; L A Moran
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

  3 in total

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