Literature DB >> 9165

Dynamics of the aromatic amino acid residues in the globular conformation of the basic pancreatic trypsin inhibitor (BPTI). I. 1H NMR studies.

G Wagner, A DeMarco, K Wüthrich.   

Abstract

The basic pancreatic trypsin inhibitor (BPTI) was investigated by high resolution 1H NMR techniques at 360 MHz. Observation of the amide proton resonances of the polypeptide backbone showed that the globular conformation of BPTI determined by X-ray studies in single crystals is maintained in aqueous solution over the temperature range from 4 degrees to 87 degrees. NMR studies over this temperature range of the aromatic amino acid residues of BPTI. i.e. 4 tyrosines and 4 phenylalanines, led to complete assignments of all the aromatic spin systems in the protein. From this, information was obtained on the rotational motions about the C beta--Cv bond axis of the aromatic rings in the globular form of PBTI. At 25 degrees, two tyrosine rings and one phenylalanine ring are rotating rapidly on the NMR time scale. For the other rings the transitions from slow to rapid rotational motions were investigated at variable temperatures and energy barriers for these intramolecular rate processes determined. The studies of the tyrosine resonances had been described in detail in a previous publication. The present paper describes the identification of the phenylalanine resonances and comments on some technical aspects which might be of quite general interest for the analysis of highly resolved 1H NMR spectra of proteins. Data for the tyrosines and the phenylalanines are compiled in three tables, i.e. the pK alpha-values for the tyrosines, the NMR parameters for all eight aromatics, and the parameters delta G not equal to, and, where available, delta H not equal to and delta S not equal to for the rotational motions of the rings.

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Year:  1976        PMID: 9165     DOI: 10.1007/BF00863706

Source DB:  PubMed          Journal:  Biophys Struct Mech        ISSN: 0340-1057


  15 in total

1.  Dynamics of the aromatic amino acid residues in the globular conformation of the basic pancreatic trypsin inhibitor (BPTI). II. Semi-empirical energy calculations.

Authors:  R Hetzel; K Wüthrich; J Deisenhofer; R Huber
Journal:  Biophys Struct Mech       Date:  1976-08-23

2.  Sidechain torsional potentials and motion of amino acids in porteins: bovine pancreatic trypsin inhibitor.

Authors:  B R Gelin; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

3.  Proton magnetic resonance studies of the tyrosine residues of hen lysozyme-assignment and detection of conformational mobility.

Authors:  I D Campbell; C M Dobson; R J Williams
Journal:  Proc R Soc Lond B Biol Sci       Date:  1975-06-17

4.  Assignment of aromatic amino acid PMR resonances of horse ferricytochrome c.

Authors:  C M Dobson; G R Moore; R J Williams
Journal:  FEBS Lett       Date:  1975-03-01       Impact factor: 4.124

5.  Complete tyrosine assignments in the high field 1H nuclear magnetic resonance spectrum of the bovine pancreatic trypsin inhibitor.

Authors:  G H Snyder; R Rowan; S Karplus; B D Sykes
Journal:  Biochemistry       Date:  1975-08-26       Impact factor: 3.162

6.  Pancreatic trypsin inhibitor (Kunitz). I. Structure and function.

Authors:  R Huber; D Kukla; A Rühlmann; W Steigemann
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

7.  A nuclear magnetic resonance study of bovine pancreatic trypsin inhibitor. Tyrosine titrations and backbone NH groups.

Authors:  S Karplus; G H Snyder; B D Sykes
Journal:  Biochemistry       Date:  1973-03-27       Impact factor: 3.162

8.  Proton magnetic resonance investigation of the conformational properties of the basic pancreatic trypsin inhibitor.

Authors:  A Masson; K Wüthrich
Journal:  FEBS Lett       Date:  1973-04-01       Impact factor: 4.124

Review 9.  Hydrogen exchange in proteins.

Authors:  A Hvidt; S O Nielsen
Journal:  Adv Protein Chem       Date:  1966

10.  Proton magnetic resonance studies of oligopeptides containing aromatic residues.

Authors:  J S Cohen
Journal:  Biochim Biophys Acta       Date:  1971-03-23
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  50 in total

1.  Dynamics of the aromatic amino acid residues in the globular conformation of the basic pancreatic trypsin inhibitor (BPTI). II. Semi-empirical energy calculations.

Authors:  R Hetzel; K Wüthrich; J Deisenhofer; R Huber
Journal:  Biophys Struct Mech       Date:  1976-08-23

Review 2.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

3.  A simple model of backbone flexibility improves modeling of side-chain conformational variability.

Authors:  Gregory D Friedland; Anthony J Linares; Colin A Smith; Tanja Kortemme
Journal:  J Mol Biol       Date:  2008-05-11       Impact factor: 5.469

4.  Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations.

Authors:  F J Sigworth
Journal:  Biophys J       Date:  1985-05       Impact factor: 4.033

5.  Structure of FGFR3 transmembrane domain dimer: implications for signaling and human pathologies.

Authors:  Eduard V Bocharov; Dmitry M Lesovoy; Sergey A Goncharuk; Marina V Goncharuk; Kalina Hristova; Alexander S Arseniev
Journal:  Structure       Date:  2013-10-10       Impact factor: 5.006

6.  1H Nmr studies at 360 MHz of the methyl groups in native and chemically modified basic pancreatic trypsin inhibitor (BPTI).

Authors:  A De Marco; H Tschesche; G Wagner; K Wüthrich
Journal:  Biophys Struct Mech       Date:  1977-09-28

7.  A model for the resistance of the proton channel formed by the proteolipid of ATPase.

Authors:  Z Schulten; K Schulten
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

8.  Forging tools for refining predicted protein structures.

Authors:  Xingcheng Lin; Nicholas P Schafer; Wei Lu; Shikai Jin; Xun Chen; Mingchen Chen; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-18       Impact factor: 11.205

9.  Experimentally assessing molecular dynamics sampling of the protein native state conformational distribution.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biophys Chem       Date:  2012-02-14       Impact factor: 2.352

10.  Correlations between internal mobility and stability of globular proteins.

Authors:  K Wüthrich; G Wagner; R Richarz; W Braun
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

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