Literature DB >> 493151

Nucleotide sequence of a highly repetitive component of rat DNA.

M Pech, T Igo-Kemenes, H G Zachau.   

Abstract

A highly repetitive component of rat DNA which could not yet be enriched by density gradient centrifugation was isolated with the help of the restriction nuclease Sau3AI. This nuclease converted the bulk of the DNA to small fragments and left a repetitive DNA component as large fragments which were subsequently purified by gel filtration and electrophoresis. This DNA component which was termed rat satellite DNA I is composed of tandemly repeated 370 bp blocks. According to sequence analysis the 370 bp repeats consist of alternating 92 and 93 bp units with homologous but not identical sequences. Methylation of CpG residues was correlated to the rate of cleavage by restriction nucleases. Significant homologies exist between the sequences of rat satellite DNA I and satellite DNAs of several other organisms. The divergence of the sequence of rat satellite DNA I was discussed with respect to evolutionary considerations.

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Year:  1979        PMID： 493151      PMCID： PMC328026          DOI： 10.1093/nar/7.2.417

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  35 in total

Review 1.  The arrangement and evolution of highly repeated (satellite) DNA sequences with special reference to Drosophila.

Authors:  R Appels; W J Peacock
Journal:  Int Rev Cytol Suppl       Date:  1978

2.  Homology between human and simian repeated DNA.

Authors:  L Manuelidis; J C Wu
Journal:  Nature       Date:  1978-11-02       Impact factor: 49.962

3.  The arrangement of simian virus 40 sequences in the DNA of transformed cells.

Authors:  M Botchan; W Topp; J Sambrook
Journal:  Cell       Date:  1976-10       Impact factor: 41.582

4.  Highly reiterated sequences of SIMIANSIMIANSIMIANSIMIANSIMIAN.

Authors:  H Rosenberg; M Singer; M Rosenberg
Journal:  Science       Date:  1978-04-28       Impact factor: 47.728

5.  DNA sequence organization in Drosophila heterochromatin.

Authors:  D Brutlag; M Carlson; K Fry; T S Hsieh
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

6.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

7.  The quantitation of fluorescence by photography.

Authors:  D E Pulleyblank; M Shure; J Vinograd
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

8.  Detection of 5-methylcytosine in DNA sequences.

Authors:  H Ohmori; J I Tomizawa; A M Maxam
Journal:  Nucleic Acids Res       Date:  1978-05       Impact factor: 16.971

9.  Characterization of distinct segments in mouse satellite DNA by restriction nucleases.

Authors:  W Hörz; H G Zachau
Journal:  Eur J Biochem       Date:  1977-03-01

10.  Subunit structure of chromatin and the organization of eukaryotic highly repetitive DNA: recurrent periodicities and models for the evolutionary origins of repetitive DNA.

Authors:  J J Maio; F L Brown; P R Musich
Journal:  J Mol Biol       Date:  1977-12-15       Impact factor: 5.469
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  33 in total

1.  Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA.

Authors:  R R Meehan; J D Lewis; A P Bird
Journal:  Nucleic Acids Res       Date:  1992-10-11       Impact factor: 16.971

2.  New families of site-specific repetitive DNA sequences that comprise constitutive heterochromatin of the Syrian hamster (Mesocricetus auratus, Cricetinae, Rodentia).

Authors:  Kazuhiko Yamada; Eikichi Kamimura; Mariko Kondo; Kimiyuki Tsuchiya; Chizuko Nishida-Umehara; Yoichi Matsuda
Journal:  Chromosoma       Date:  2005-11-23       Impact factor: 4.316

3.  A new family of LTR-like sequences abundantly expressed in rat tumors.

Authors:  N Suzuki; T Fujiyoshi; Y Maehara; K Takahashi; M Yamamoto; H Endo
Journal:  Nucleic Acids Res       Date:  1986-12-09       Impact factor: 16.971

4.  Sequence and evolution of rhesus monkey alphoid DNA.

Authors:  L M Pike; A Carlisle; C Newell; S B Hong; P R Musich
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

5.  DNA denatures upon drying after ethanol precipitation.

Authors:  J Svaren; S Inagami; E Lovegren; R Chalkley
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

6.  Different repeat lengths in rat satellite I DNA containing chromatin and bulk chromatin.

Authors:  A Omori; T Igo-Kemenes; H G Zachau
Journal:  Nucleic Acids Res       Date:  1980-11-25       Impact factor: 16.971

7.  Non-random arrangement of nucleosomes in satellite I containing chromatin of rat liver.

Authors:  T Igo-Kemenes; A Omori; H G Zachau
Journal:  Nucleic Acids Res       Date:  1980-11-25       Impact factor: 16.971

8.  The independent evolution of two closely related satellite DNA elements in rats (Rattus).

Authors:  F R Witney; A V Furano
Journal:  Nucleic Acids Res       Date:  1983-01-25       Impact factor: 16.971

9.  Molecular analysis of highly repeated genome fractions in Solanum and their use as markers for the characterization of species and cultivars.

Authors:  G Schweizer; N Borisjuk; L Borisjuk; M Stadler; T Stelzer; L Schilde; V Hemleben
Journal:  Theor Appl Genet       Date:  1993-02       Impact factor: 5.699

10.  DNA lability induced by nimustine and ramustine in rat glioma cells.

Authors:  K Mineura; S Fushimi; Y Itoh; M Kowada
Journal:  J Neurol Neurosurg Psychiatry       Date:  1988-11       Impact factor: 10.154
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