Literature DB >> 4510294

The reverse turn as a polypeptide conformation in globular proteins.

J L Crawford, W N Lipscomb, C G Schellman.   

Abstract

The reverse turn, involving four consecutive amino acids, as a tertiary conformation in globular proteins is defined in terms of dihedral angles, the C(1) (alpha)...C(4) (alpha) distance and the O(1)...H-N(4) hydrogen bond distance. In seven proteins we find 125 examples of turns, comprising 33% of the amino acids in these proteins, as compared with 34% of the residues forming helices and only 17% forming beta-sheets. The amino-acid compositions of turns, helices, and beta-sheets are analyzed in some detail. We find Asn and Gly mainly in turns, Pro in turns (and at the beginning of helices), and Glu in helices. In these turns a statistical survey indicates that 19% of Asp residues are in the first position, 33% of Pro residues are in the second position, 24% of Asn residues are in the third position, and 26% of Trp residues are in the fourth position.

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Year:  1973        PMID: 4510294      PMCID: PMC433301          DOI: 10.1073/pnas.70.2.538

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

1.  On the conformation of the hen egg-white lysozyme molecule.

Authors:  C C Blake; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

2.  The structure of cytochrome b 5 at 2.0 Angstrom resolution.

Authors:  F S Mathews; P Argos; M Levine
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

3.  Protein folding.

Authors:  I D Kuntz
Journal:  J Am Chem Soc       Date:  1972-05-31       Impact factor: 15.419

4.  Atomic coordinates for subtilisin BPN' (or Novo).

Authors:  R A Alden; J J Birktoft; J Kraut; J D Robertus; C S Wright
Journal:  Biochem Biophys Res Commun       Date:  1971-10-15       Impact factor: 3.575

5.  Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units.

Authors:  C M Venkatachalam
Journal:  Biopolymers       Date:  1968-10       Impact factor: 2.505

6.  Folding of polypeptide chains in proteins: a proposed mechanism for folding.

Authors:  P N Lewis; F A Momany; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1971-09       Impact factor: 11.205

7.  The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A.

Authors:  H W Wyckoff; D Tsernoglou; A W Hanson; J R Knox; B Lee; F M Richards
Journal:  J Biol Chem       Date:  1970-01-25       Impact factor: 5.157

8.  Atomic co-ordinates for tosyl-alpha-chymotrypsin.

Authors:  J J Birktoft; B W Matthews; D M Blow
Journal:  Biochem Biophys Res Commun       Date:  1969-07-07       Impact factor: 3.575

Review 9.  Carboxypeptidase A: a protein and an enzyme.

Authors:  F A Quiocho; W N Lipscomb
Journal:  Adv Protein Chem       Date:  1971

Review 10.  X-ray analysis and the structure of insulin.

Authors:  T L Blundell; G G Dodson; E Dodson; D C Hodgkin; M Vijayan
Journal:  Recent Prog Horm Res       Date:  1971
  10 in total
  44 in total

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2.  Positive theta-angles in proteins by nuclear magnetic resonance spectroscopy.

Authors:  S Ludvigsen; F M Poulsen
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Journal:  Biochem J       Date:  1991-04-15       Impact factor: 3.857

4.  Photodissociative Cross-Linking of Non-covalent Peptide-Peptide Ion Complexes in the Gas Phase.

Authors:  Huong T H Nguyen; Prokopis C Andrikopoulos; Lubomír Rulíšek; Christopher J Shaffer; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2018-05-07       Impact factor: 3.109

5.  Vibrational analysis of peptides, polypeptides, and proteins: Characteristic amide bands of beta-turns.

Authors:  J Bandekar; S Krimm
Journal:  Proc Natl Acad Sci U S A       Date:  1979-02       Impact factor: 11.205

6.  Heterodimer formation and crystal nucleation of gramicidin D.

Authors:  B M Burkhart; R M Gassman; D A Langs; W A Pangborn; W L Duax
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

7.  Crystal structure analysis of amicyanin and apoamicyanin from Paracoccus denitrificans at 2.0 A and 1.8 A resolution.

Authors:  R Durley; L Chen; L W Lim; F S Mathews; V L Davidson
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8.  The structure of two alanine containing ferrichromes: sequence determination by proton magnetic resonance.

Authors:  M Llinás; J B Neilands
Journal:  Biophys Struct Mech       Date:  1976-08-23

9.  The isomorphous structures of prethrombin2, hirugen-, and PPACK-thrombin: changes accompanying activation and exosite binding to thrombin.

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Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

10.  A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome.

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Journal:  Bioinform Biol Insights       Date:  2009-10-05
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