Literature DB >> 5289387

Folding of polypeptide chains in proteins: a proposed mechanism for folding.

P N Lewis, F A Momany, H A Scheraga.   

Abstract

A mechanism is proposed for the folding of protein chains. On the basis of short-range interactions, certain aminoacid sequences have a high propensity to be, say, alpha-helical. However, these short helical (or other ordered) regions can be stabilized only by long-range interactions arising from the proximity of two such ordered regions. These regions are brought near each other by the directing influence of certain other aminoacid sequences that have a high probability of forming beta-bends or variants thereof, also on the basis of short-range interactions. An analysis is made of the tendency of various amino acids to occur in beta-bends, and it is possible to predict the regions of a chain in which a beta-bend will occur with a high degree of reliability.

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Year:  1971        PMID： 5289387      PMCID： PMC389403          DOI： 10.1073/pnas.68.9.2293

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  7 in total

1.  Predictions of structural homologies in cytochrome c proteins.

Authors:  P N Lewis; H A Scheraga
Journal:  Arch Biochem Biophys       Date:  1971-06       Impact factor: 4.013

2.  Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units.

Authors:  C M Venkatachalam
Journal:  Biopolymers       Date:  1968-10       Impact factor: 2.505

3.  The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A.

Authors:  H W Wyckoff; D Tsernoglou; A W Hanson; J R Knox; B Lee; F M Richards
Journal:  J Biol Chem       Date:  1970-01-25       Impact factor: 5.157

4.  Ferricytochrome c. I. General features of the horse and bonito proteins at 2.8 A resolution.

Authors:  R E Dickerson; T Takano; D Eisenberg; O B Kallai; L Samson; A Cooper; E Margoliash
Journal:  J Biol Chem       Date:  1971-03-10       Impact factor: 5.157

5.  Atomic co-ordinates for tosyl-alpha-chymotrypsin.

Authors:  J J Birktoft; B W Matthews; D M Blow
Journal:  Biochem Biophys Res Commun       Date:  1969-07-07       Impact factor: 3.575

6.  Helix probability profiles of denatured proteins and their correlation with native structures.

Authors:  P N Lewis; N Go; M Go; D Kotelchuck; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1970-04       Impact factor: 11.205

7.  A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus. I. Experimental procedures and chain tracing.

Authors:  A Arnone; C J Bier; F A Cotton; V W Day; E E Hazen; D C Richardson; A Yonath; J S Richardson
Journal:  J Biol Chem       Date:  1971-04-10       Impact factor: 5.157
  7 in total
  51 in total

1.  Measuring the refolding of beta-sheets with different turn sequences on a nanosecond time scale.

Authors:  Rita P-Y Chen; Joseph J-T Huang; Hsin-Liang Chen; Howard Jan; Marappan Velusamy; Chung-Tien Lee; Wunshain Fann; Randy W Larsen; Sunney I Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

2.  Identification and cDNA cloning of a new nodule-specific gene, Nms-25 (nodulin-25) of Medicago sativa.

Authors:  G B Kiss; E Vincze; Z Végh; G Tóth; J Soós
Journal:  Plant Mol Biol       Date:  1990-04       Impact factor: 4.076

3.  Evidence for an essential arginine recognition site on adenosine 3':5'-cyclic monophosphate-dependent protein kinase of rabbit skeletal muscle.

Authors:  M Matsuo; C H Huang; L C Huang
Journal:  Biochem J       Date:  1978-08-01       Impact factor: 3.857

4.  Amino acid distributions around O-linked glycosylation sites.

Authors:  I B Wilson; Y Gavel; G von Heijne
Journal:  Biochem J       Date:  1991-04-15       Impact factor: 3.857

5.  The role of an L-leucine residue on the conformations of glycyl-L-leucine oligomers and its N- or C-terminal dependence: infrared absorption and Raman scattering studies.

Authors:  Hiro-Fumi Okabayashi; Hide-Hiro Kanbe; Charmian J O'Connor
Journal:  Eur Biophys J       Date:  2015-09-18       Impact factor: 1.733

6.  Correlation of degradative rates of proteins with a parameter calculated from amino acid composition and subunit size.

Authors:  F A Momany; J J Aguanno; A R Larrabee
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

7.  Conformational flexibility and protein folding: rigid structural fragments connected by flexible joints in subtilisin BPN.

Authors:  B Honig; A Ray; C Levinthal
Journal:  Proc Natl Acad Sci U S A       Date:  1976-06       Impact factor: 11.205

8.  Photodissociative Cross-Linking of Non-covalent Peptide-Peptide Ion Complexes in the Gas Phase.

Authors:  Huong T H Nguyen; Prokopis C Andrikopoulos; Lubomír Rulíšek; Christopher J Shaffer; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2018-05-07       Impact factor: 3.109

9.  Staphylococcal nuclease folding intermediate characterized by hydrogen exchange and NMR spectroscopy.

Authors:  M D Jacobs; R O Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

10.  Sequence determination of the thiolester site of the fourth component of human complement.

Authors:  R A Harrison; M L Thomas; B F Tack
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205
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