Literature DB >> 3906565

Stimulation of intermolecular ligation with E. coli DNA ligase by high concentrations of monovalent cations in polyethylene glycol solutions.

K Hayashi, M Nakazawa, Y Ishizaki, N Hiraoka, A Obayashi.   

Abstract

In the presence of high concentrations of the nonspecific polymer polyethylene glycol (PEG), intermolecular cohesive-end ligation with the DNA ligase from Escherichia coli was stimulated by high salt concentrations: 200 mM NaCl or 300 mM KCl in 10% (w/v) PEG 6000 solutions, and 100-200 mM NaCl or 150-300 mM KCl in 15% PEG 6000 solutions. Intermolecular blunt-end ligation with this ligase was also stimulated at 100-150 mM NaCl or 150-250 mM KCl in 15% PEG 6000 solutions. The extent of such intermolecular ligation increased and the salt concentrations at which ligation was stimulated extended to lower concentrations when we raised the temperature from 10 to 37 degrees C.

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Year:  1985        PMID: 3906565      PMCID: PMC322104          DOI: 10.1093/nar/13.22.7979

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature.

Authors:  J MARMUR; P DOTY
Journal:  J Mol Biol       Date:  1962-07       Impact factor: 5.469

2.  A simple, three-step procedure for the large scale purification of DNA ligase from a hybrid lambda lysogen constructed in vitro.

Authors:  S M Panasenko; R J Alazard; I R Lehman
Journal:  J Biol Chem       Date:  1978-07-10       Impact factor: 5.157

3.  Deoxyribonucleic acid ligase. A steady state kinetic analysis of the reaction catalyzed by the enzyme from Escherichia coli.

Authors:  P Modorich; I R Lehman
Journal:  J Biol Chem       Date:  1973-11-10       Impact factor: 5.157

4.  Conformational transitions of polynucleotides in polymer media.

Authors:  T C Laurent; B N Preston; B Carlsson
Journal:  Eur J Biochem       Date:  1974-04-01

5.  Deoxyribonucleic acid ligase. Isolation and physical characterization of the homogeneous enzyme from Escherichia coli.

Authors:  P Modrich; Y Anraku; I R Lehman
Journal:  J Biol Chem       Date:  1973-11-10       Impact factor: 5.157

6.  Ezymatic breakage and joining of deoxyribonucleic acid. VII. Properties of the enzyme-adenylate intermediate in the polynucleotide ligase reaction.

Authors:  B Weiss; A Thompson; C C Richardson
Journal:  J Biol Chem       Date:  1968-09-10       Impact factor: 5.157

7.  Macromolecular crowding allows blunt-end ligation by DNA ligases from rat liver or Escherichia coli.

Authors:  S B Zimmerman; B H Pheiffer
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

8.  Dependence of the melting temperature of DNA on salt concentration.

Authors:  C Schildkraut
Journal:  Biopolymers       Date:  1965       Impact factor: 2.505

9.  Influence of monovalent cations on the activity of T4 DNA ligase in the presence of polyethylene glycol.

Authors:  K Hayashi; M Nakazawa; Y Ishizaki; A Obayashi
Journal:  Nucleic Acids Res       Date:  1985-05-10       Impact factor: 16.971

10.  Enzymatic oligomerization of bacteriophage P22 DNA and of linear Simian virus 40 DNA.

Authors:  V Sgaramella
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

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  8 in total

1.  Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.

Authors:  Austin P So; Robin F B Turner; Charles A Haynes
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

2.  Sequence-specific ligation of DNA using RecA protein.

Authors:  L J Ferrin; R D Camerini-Otero
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

Review 3.  Cook Your Samples: The Application of Microwave Irradiation in Speeding Up Biological Processes.

Authors:  Chen Liang; Ziwei Liu; Chaoping Liu; Yimeng Li; Hongyu Yuan; Tianwen Wang
Journal:  Mol Biotechnol       Date:  2018-03       Impact factor: 2.695

4.  Regulation of inter- and intramolecular ligation with T4 DNA ligase in the presence of polyethylene glycol.

Authors:  K Hayashi; M Nakazawa; Y Ishizaki; N Hiraoka; A Obayashi
Journal:  Nucleic Acids Res       Date:  1986-10-10       Impact factor: 16.971

5.  Effects of additives on efficiency and specificity of ligase detection reaction.

Authors:  Zhen-Xian Xiao; Hui-Min Cao; Xiao-Hui Luan; Jian-Long Zhao; Dong-Zhi Wei; Jun-Hua Xiao
Journal:  Mol Biotechnol       Date:  2007-02       Impact factor: 2.695

6.  One step assembly of multiple DNA fragments with a designed order and orientation in Bacillus subtilis plasmid.

Authors:  Kenji Tsuge; Kuniko Matsui; Mitsuhiro Itaya
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

7.  Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA ligase.

Authors:  Gregory J S Lohman; Lixin Chen; Thomas C Evans
Journal:  J Biol Chem       Date:  2011-10-25       Impact factor: 5.157

8.  Comparative analysis of the end-joining activity of several DNA ligases.

Authors:  Robert J Bauer; Alexander Zhelkovsky; Katharina Bilotti; Laura E Crowell; Thomas C Evans; Larry A McReynolds; Gregory J S Lohman
Journal:  PLoS One       Date:  2017-12-28       Impact factor: 3.240

  8 in total

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