Literature DB >> 6351067

Macromolecular crowding allows blunt-end ligation by DNA ligases from rat liver or Escherichia coli.

S B Zimmerman, B H Pheiffer.   

Abstract

In the presence of high concentrations of any of several types of macromolecules, DNA ligase preparations from rat liver nuclei or from Escherichia coli actively catalyze the blunt-end ligation of DNA. This is in contrast to the lack of activity on such substrates by these enzymes under conventional assay conditions. In addition, the previously established activity of T4 DNA ligase on blunt-ended molecules is greatly increased in the presence of high concentrations of macromolecules. Because such crowded solutions may well be a more adequate model for intracellular conditions than assays in dilute solutions, we suggest that blunt-end ligation may be a widely occurring reaction in vivo.

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Year:  1983        PMID: 6351067      PMCID: PMC390173          DOI: 10.1073/pnas.80.19.5852

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Diphosphopyridine nucleotide: a cofactor for the polynucleotide-joining enzyme from Escherichia coli.

Authors:  B M Olivera; I R Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  1967-06       Impact factor: 11.205

2.  Enzymatic joining of DNA strands: a novel reaction of diphosphopyridine nucleotide.

Authors:  S B Zimmerman; J W Little; C K Oshinsky; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1967-06       Impact factor: 11.205

3.  Replication of lambda dv plasmid in vitro promoted by purified lambda O and P proteins.

Authors:  T Tsurimoto; K Matsubara
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

4.  Perfect palindromic lac operator DNA sequence exists as a stable cruciform structure in supercoiled DNA in vitro but not in vivo.

Authors:  R R Sinden; S S Broyles; D E Pettijohn
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

5.  Patterns of integration of DNA microinjected into cultured mammalian cells: evidence for homologous recombination between injected plasmid DNA molecules.

Authors:  K R Folger; E A Wong; G Wahl; M R Capecchi
Journal:  Mol Cell Biol       Date:  1982-11       Impact factor: 4.272

6.  High-efficiency ligation and recombination of DNA fragments by vertebrate cells.

Authors:  C K Miller; H M Temin
Journal:  Science       Date:  1983-05-06       Impact factor: 47.728

7.  Nonspecific stabilization of stress-susceptible proteins by stress-resistant proteins: a model for the biological role of heat shock proteins.

Authors:  K W Minton; P Karmin; G M Hahn; A P Minton
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

Review 8.  How crowded is the cytoplasm?

Authors:  A B Fulton
Journal:  Cell       Date:  1982-09       Impact factor: 41.582

9.  An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction.

Authors:  J W Little
Journal:  J Biol Chem       Date:  1967-02-25       Impact factor: 5.157

10.  Initiation of bacteriophage lambda DNA replication in vitro with purified lambda replication proteins.

Authors:  M S Wold; J B Mallory; J D Roberts; J H LeBowitz; R McMacken
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

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  46 in total

1.  Protein-DNA footprinting by endcapped duplex oligodeoxyribonucleotides.

Authors:  Pei-Sze Ng; Donald E Bergstrom
Journal:  Nucleic Acids Res       Date:  2004-07-19       Impact factor: 16.971

2.  Ring-like nucleoids and DNA repair through error-free nonhomologous end joining in Deinococcus radiodurans.

Authors:  Abraham Minsky; Eyal Shimoni; Joseph Englander
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

3.  Cloning and functional characterization of an NAD(+)-dependent DNA ligase from Staphylococcus aureus.

Authors:  F S Kaczmarek; R P Zaniewski; T D Gootz; D E Danley; M N Mansour; M Griffor; A V Kamath; M Cronan; J Mueller; D Sun; P K Martin; B Benton; L McDowell; D Biek; M B Schmid
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

4.  'Macromolecular crowding' is a primary factor in the organization of the cytoskeleton.

Authors:  P Cuneo; E Magri; A Verzola; E Grazi
Journal:  Biochem J       Date:  1992-01-15       Impact factor: 3.857

5.  Characterization of recombinant human renin: kinetics, pH-stability, and peptidomimetic inhibitor binding.

Authors:  T F Holzman; C C Chung; R Edalji; D A Egan; M Martin; E J Gubbins; G A Krafft; G T Wang; A M Thomas; S H Rosenberg
Journal:  J Protein Chem       Date:  1991-10

6.  The yeast DNA ligase gene CDC9 is controlled by six orientation specific upstream activating sequences that respond to cellular proliferation but which alone cannot mediate cell cycle regulation.

Authors:  J H White; A L Johnson; N F Lowndes; L H Johnston
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

7.  RecA protein filaments can juxtapose DNA ends: an activity that may reflect a function in DNA repair.

Authors:  J C Register; J Griffith
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

8.  In vitro transcription of immunoglobulin genes in a B-cell extract: effects of enhancer and promoter sequences.

Authors:  R Sen; D Baltimore
Journal:  Mol Cell Biol       Date:  1987-05       Impact factor: 4.272

9.  Identification of Mechanism-Based Inactivation in P450-Catalyzed Cyclopropanation Facilitates Engineering of Improved Enzymes.

Authors:  Hans Renata; Russell D Lewis; Michael J Sweredoski; Annie Moradian; Sonja Hess; Z Jane Wang; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2016-09-14       Impact factor: 15.419

10.  Cloning, nucleotide sequence, and engineered expression of Thermus thermophilus DNA ligase, a homolog of Escherichia coli DNA ligase.

Authors:  G Lauer; E A Rudd; D L McKay; A Ally; D Ally; K C Backman
Journal:  J Bacteriol       Date:  1991-08       Impact factor: 3.490

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