Literature DB >> 3022231

Regulation of inter- and intramolecular ligation with T4 DNA ligase in the presence of polyethylene glycol.

K Hayashi, M Nakazawa, Y Ishizaki, N Hiraoka, A Obayashi.   

Abstract

Polyethylene glycol (PEG) stimulates ligation with T4 DNA ligase. In 10% (w/v) PEG 6,000 solutions, only intermolecular ligation is enhanced by monovalent cations, while both inter- and intramolecular ligation occur without their presence. Similar stimulation was also caused by divalent cations or polyamines in the PEG 6,000 solutions. Such properties of the ligase could be applied to control the extent of inter- and intramolecular ligation. Ligation with cations or polyamines in 10% PEG 6,000 solutions was effective for intermolecular ligation. Ligation without cations or polyamines in 6.0% to 10% PEG 6,000 solutions was effective for intramolecular ligation.

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Year:  1986        PMID: 3022231      PMCID: PMC311784          DOI: 10.1093/nar/14.19.7617

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  Studies on the cleavage of bacteriophage lambda DNA with EcoRI Restriction endonuclease.

Authors:  M Thomas; R W Davis
Journal:  J Mol Biol       Date:  1975-01-25       Impact factor: 5.469

2.  ISOLATION OF HIGH MOLECULAR WEIGHT DNA FROM HEMOPHILUS INFLUENZAE.

Authors:  K I BERNS; C A THOMAS
Journal:  J Mol Biol       Date:  1965-03       Impact factor: 5.469

3.  Ligation of EcoRI endonuclease-generated DNA fragments into linear and circular structures.

Authors:  A Dugaiczyk; H W Boyer; H M Goodman
Journal:  J Mol Biol       Date:  1975-07-25       Impact factor: 5.469

4.  Compact form of DNA induced by spermidine.

Authors:  L C Gosule; J A Schellman
Journal:  Nature       Date:  1976-01-29       Impact factor: 49.962

5.  Chromosomal analogues: long-range order in psi-condensed DNA.

Authors:  L S Lerman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974

6.  Packaging of the bacteriophage lambda chromosome: effect of chromosome length.

Authors:  M Feiss; R A Fisher; M A Crayton; C Egner
Journal:  Virology       Date:  1977-03       Impact factor: 3.616

7.  DNA condensation with polyamines I. Spectroscopic studies.

Authors:  L C Gosule; J A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

8.  DNA condensation with polyamines. II. Electron microscopic studies.

Authors:  D K Chattoraj; L C Gosule; A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

9.  Escherichia coli mutants deficient in the production of alkaline phosphatase isozymes.

Authors:  A Nakata; M Yamaguchi; K Izutani; M Amemura
Journal:  J Bacteriol       Date:  1978-04       Impact factor: 3.490

10.  A transition to a compact form of DNA in polymer solutions.

Authors:  L S Lerman
Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

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  14 in total

1.  Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.

Authors:  Austin P So; Robin F B Turner; Charles A Haynes
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

2.  Protein-DNA footprinting by endcapped duplex oligodeoxyribonucleotides.

Authors:  Pei-Sze Ng; Donald E Bergstrom
Journal:  Nucleic Acids Res       Date:  2004-07-19       Impact factor: 16.971

3.  Localization of the genetic defect in familial adenomatous polyposis within a small region of chromosome 5.

Authors:  Y Nakamura; M Lathrop; M Leppert; M Dobbs; J Wasmuth; E Wolff; M Carlson; E Fujimoto; K Krapcho; T Sears
Journal:  Am J Hum Genet       Date:  1988-11       Impact factor: 11.025

4.  Computer simulation of DNA ligation: determination of initial DNA concentrations favouring the formation of recombinant molecules.

Authors:  F Dardel
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

Review 5.  Cook Your Samples: The Application of Microwave Irradiation in Speeding Up Biological Processes.

Authors:  Chen Liang; Ziwei Liu; Chaoping Liu; Yimeng Li; Hongyu Yuan; Tianwen Wang
Journal:  Mol Biotechnol       Date:  2018-03       Impact factor: 2.695

6.  Turbo cloning: a fast, efficient method for cloning PCR products and other blunt-ended DNA fragments into plasmids.

Authors:  A C Boyd
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

7.  A Novel 5'-Iodonucleoside Allows Efficient Nonenzymatic Ligation of Single-stranded and Duplex DNAs.

Authors:  Yanzheng Xu; Eric T Kool
Journal:  Tetrahedron Lett       Date:  1997-08-11       Impact factor: 2.415

8.  Activation of a system for the joining of nonhomologous DNA ends during Xenopus egg maturation.

Authors:  W Goedecke; W Vielmetter; P Pfeiffer
Journal:  Mol Cell Biol       Date:  1992-02       Impact factor: 4.272

9.  Effects of temperature on excluded volume-promoted cyclization and concatemerization of cohesive-ended DNA longer than 0.04 Mb.

Authors:  D Louie; P Serwer
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

10.  A single-molecule sequencing assay for the comprehensive profiling of T4 DNA ligase fidelity and bias during DNA end-joining.

Authors:  Vladimir Potapov; Jennifer L Ong; Bradley W Langhorst; Katharina Bilotti; Dan Cahoon; Barry Canton; Thomas F Knight; Thomas C Evans; Gregory J S Lohman
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

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