Literature DB >> 3753768

MBIS--an integrated system for the retrieval and analyses of sequence data from nucleic acids and proteins.

C A Bucholtz, A H Reisner.   

Abstract

A computer-based system termed MBIS (the Molecular Biological Information Service), written in FORTRAN77 and Digital Command Language (DCL) and running on a Digital Equipment Corporation VAX computer under the VMS operating system (V4.1) is in use at the Division of Molecular Biology. MBIS consists of three main sections: 1) The utility section, used by the system's manager to tailor the five commonly available databases so that they are useable by the applications programmes running on the system; 2) The retrieval section, used to find and extract specific sequences or bibliographic information, and 3) The analytical section, used to analyse and compare sequences either extracted from the databases or input by the user. The nucleotide databases maintained are GenBank, EMBL and PIR (Protein Identification Resource, National Biomedical Research Foundation) and the peptide databases are PIR and NEWAT. In addition, users can originate and maintain their own databases. Those programmes which feature graphics output are compatible with most emulators of the Tektronix 4010 terminal.

Mesh:

Substances:

Year:  1986        PMID: 3753768      PMCID: PMC339398          DOI: 10.1093/nar/14.1.265

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  Better safe than sorry.

Authors:  Jeremy Bray
Journal:  Nature       Date:  1985-03-28       Impact factor: 49.962

2.  Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

3.  Computer analysis and structure prediction of nucleic acids and proteins.

Authors:  M Kanehisa; P Klein; P Greif; C DeLisi
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  Utilization of sequence libraries on a 16-bit mini computer with particular reference to high speed searching.

Authors:  A H Reisner; C A Bucholtz
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

5.  A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens.

Authors:  J Novotný; C Auffray
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  Codon preference and its use in identifying protein coding regions in long DNA sequences.

Authors:  R Staden; A D McLachlan
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

8.  Assessment of similarities of pairs and groups of proteins using transformed amino-acid-residue data.

Authors:  A H Reisner; N H Westwood
Journal:  J Mol Evol       Date:  1982       Impact factor: 2.395

9.  A computer program to search for tRNA genes.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1980-02-25       Impact factor: 16.971

10.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

View more
  8 in total

1.  A contiguous sequence in spinach nuclear DNA is homologous to three separated sequences in chloroplast DNA.

Authors:  W Y Cheung; N S Scott
Journal:  Theor Appl Genet       Date:  1989-05       Impact factor: 5.699

2.  Human satellite-III DNA: an example of a "macrosatellite" polymorphism.

Authors:  C Fowler; R Drinkwater; J Skinner; L Burgoyne
Journal:  Hum Genet       Date:  1988-07       Impact factor: 4.132

3.  Mapping from GenBank to MEDLINE.

Authors:  E J Bicknell; R Rada; S Davidson; R Stander
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

4.  Grapevine yellow speckle viroid: structural features of a new viroid group.

Authors:  A M Koltunow; M A Rezaian
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

5.  Cloning and nucleotide sequence of the Salmonella typhimurium LT2 gnd gene and its homology with the corresponding sequence of Escherichia coli K12.

Authors:  P Reeves; G Stevenson
Journal:  Mol Gen Genet       Date:  1989-05

6.  The cps gene cluster of Salmonella strain LT2 includes a second mannose pathway: sequence of two genes and relationship to genes in the rfb gene cluster.

Authors:  G Stevenson; S J Lee; L K Romana; P R Reeves
Journal:  Mol Gen Genet       Date:  1991-06

7.  Molecular analysis of a Salmonella enterica group E1 rfb gene cluster: O antigen and the genetic basis of the major polymorphism.

Authors:  L Wang; L K Romana; P R Reeves
Journal:  Genetics       Date:  1992-03       Impact factor: 4.562

8.  Identification and sequence of the gene for abequose synthase, which confers antigenic specificity on group B salmonellae: homology with galactose epimerase.

Authors:  P Wyk; P Reeves
Journal:  J Bacteriol       Date:  1989-10       Impact factor: 3.490

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.