Literature DB >> 3714498

Peculiar feature of the organization of rRNA genes of the Chlorella chloroplast DNA.

T Yamada, M Shimaji.   

Abstract

The organization of a cloned rRNA gene cluster from Chlorella ellipsoidea chloroplast DNA (cpDNA) has been analyzed. Southern hybridization experiments with labelled chloroplast rRNAs as probes revealed an extraordinarily large size of the 16S-23S rRNA spacer region, ca. 4.8 kbp, almost twice as large as those of most higher plants. The nucleotide sequence determined on this region has shown that: (1) The tRNAIle gene locating in this region is similar to those of higher plant chloroplasts, blue-green algae and E. coli but does not contain any introns in contrast to higher plant chloroplasts. (2) The tRNAAla gene is absent from this region. (3) There are four open reading frames (ORFs) coding for 55, 102, 107 and 110 amino acids, respectively. (4) A few sets of unique sequence were found repeatedly in this region. (5) The 23S rRNA gene is coded on the opposite strand in the reverse order. This arrangement of the 16S-23S rRNA region of Chlorella cpDNA is quite different from any of those reported so far for various organisms.

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Year:  1986        PMID: 3714498      PMCID: PMC339818          DOI: 10.1093/nar/14.9.3827

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Isolation and Characterization of Chloroplast DNA from Chlorella ellipsoidea.

Authors:  T Yamada
Journal:  Plant Physiol       Date:  1982-07       Impact factor: 8.340

2.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

3.  Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids.

Authors:  A J Berk; P A Sharp
Journal:  Cell       Date:  1977-11       Impact factor: 41.582

4.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

Review 5.  Comparative organization of chloroplast genomes.

Authors:  J D Palmer
Journal:  Annu Rev Genet       Date:  1985       Impact factor: 16.830

6.  Sequencing of 16S--23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes.

Authors:  L Graf; H Kössel; E Stutz
Journal:  Nature       Date:  1980-08-28       Impact factor: 49.962

7.  The nucleotide sequences of tRNASer (GCU) and tRNAGln (UUG) genes from tobacco chloroplasts.

Authors:  H Deno; M Sugiura
Journal:  Nucleic Acids Res       Date:  1983-12-10       Impact factor: 16.971

8.  Sequencing of the 16S-23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes.

Authors:  W Koch; K Edwards; H Kössel
Journal:  Cell       Date:  1981-07       Impact factor: 41.582

9.  The complete nucleotide sequence of a 23-S rRNA gene from tobacco chloroplasts.

Authors:  F Takaiwa; M Sugiura
Journal:  Eur J Biochem       Date:  1982-05

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  19 in total

1.  A 16 kb small single-copy region separates the plastid DNA inverted repeat of the unicellular red alga Cyanidium caldarium: physical mapping of the IR-flanking regions and nucleotide sequences of the psbD-psbC, rps16, 5S rRNA and rpl21 genes.

Authors:  U Maid; K Zetsche
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

2.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; N Dank; S Nock; A Schön
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

Review 3.  The chloroplast genome.

Authors:  M Sugiura
Journal:  Plant Mol Biol       Date:  1992-05       Impact factor: 4.076

4.  Structural features of the plastid ribosomal RNA operons of two red algae: Antithamnion sp. and Cyanidium caldarium.

Authors:  U Maid; K Zetsche
Journal:  Plant Mol Biol       Date:  1991-04       Impact factor: 4.076

5.  Sequence of the plastid rDNA spacer region of the brown alga Pylaiella littoralis (L.) Kjellm. Evolutionary significance.

Authors:  Y Markowicz; R Mache; S L Goër
Journal:  Plant Mol Biol       Date:  1988-09       Impact factor: 4.076

6.  Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions.

Authors:  G de Lanversin; D T Pillay; B Jacq
Journal:  Plant Mol Biol       Date:  1987-01       Impact factor: 4.076

7.  The chloroplast genome of an exsymbiotic Chlorella-like green alga.

Authors:  A M Schuster; J A Waddle; K Korth; R H Meints
Journal:  Plant Mol Biol       Date:  1990-05       Impact factor: 4.076

Review 8.  Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses.

Authors:  K Sakaguchi
Journal:  Microbiol Rev       Date:  1990-03

9.  Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping.

Authors:  J R Manhart; K Kelly; B S Dudock; J D Palmer
Journal:  Mol Gen Genet       Date:  1989-04

10.  Loss of transfer RNA genes from the plastid 16S-23S ribosomal RNA gene spacer in a parasitic plant.

Authors:  C F Wimpee; R Morgan; R L Wrobel
Journal:  Curr Genet       Date:  1992-04       Impact factor: 3.886

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