Literature DB >> 24277464

Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions.

G de Lanversin1, D T Pillay, B Jacq.   

Abstract

The sequence of the ribosomal spacer region of soybean chloroplast DNA including the 3' end of the 16S rRNA gene, the tRNA(Ala) and tRNA(Ile) genes (but not their introns), the three intergenic regions and the 5' end of the 23S rRNA gene, has been determined. This sequence has been compared to corresponding regions of other angiosperm chloroplast DNAs. Secondary structure models are proposed for the entirety of the intergenic regions a, b and c and for the flanking rRNA regions. A model for a common secondary structure of the ribosomal spacer intergenic regions from chloroplasts of higher plants is proposed, which is supported by comparative evidence.

Entities:  

Year:  1987        PMID： 24277464     DOI： 10.1007/BF00014187

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  41 in total

1.  Characterization of soybean chloroplast ribosomal RNA genes.

Authors:  G Singh; G de Lanversin; N A Straus; D T Pillay
Journal:  Curr Genet       Date:  1984-12       Impact factor: 3.886

2.  Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs.

Authors:  L Nelles; B L Fang; G Volckaert; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1984-12-11       Impact factor: 16.971

3.  Apple II PASCAL programs for molecular biologists.

Authors:  B Malthiery; B Bellon; D Giorgi; B Jacq
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  Sequencing of the 16S-23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes.

Authors:  W Koch; K Edwards; H Kössel
Journal:  Cell       Date:  1981-07       Impact factor: 41.582

5.  The nucleotide sequence of the maize and spinach chloroplast isoleucine transfer RNA encoded in the 16S to 23S rDNA spacer.

Authors:  P Guillemaut; J H Weil
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

6.  The complete nucleotide sequence of a 23-S rRNA gene from tobacco chloroplasts.

Authors:  F Takaiwa; M Sugiura
Journal:  Eur J Biochem       Date:  1982-05

7.  Peculiar feature of the organization of rRNA genes of the Chlorella chloroplast DNA.

Authors:  T Yamada; M Shimaji
Journal:  Nucleic Acids Res       Date:  1986-05-12       Impact factor: 16.971

8.  Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.

Authors:  C Glotz; C Zwieb; R Brimacombe; K Edwards; H Kössel
Journal:  Nucleic Acids Res       Date:  1981-07-24       Impact factor: 16.971

9.  Structure of mouse rRNA precursors. Complete sequence and potential folding of the spacer regions between 18S and 28S rRNA.

Authors:  B Michot; J P Bachellerie; F Raynal
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

10.  Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.

Authors:  F Michel; B Dujon
Journal:  EMBO J       Date:  1983       Impact factor: 11.598
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  2 in total

1.  Sequence and secondary structure of the central domain of Drosophila 26S rRNA: a universal model for the central domain of the large rRNA containing the region in which the central break may happen.

Authors:  G de Lanversin; B Jacq
Journal:  J Mol Evol       Date:  1989-05       Impact factor: 2.395

2.  Loss of transfer RNA genes from the plastid 16S-23S ribosomal RNA gene spacer in a parasitic plant.

Authors:  C F Wimpee; R Morgan; R L Wrobel
Journal:  Curr Genet       Date:  1992-04       Impact factor: 3.886
  2 in total

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