Literature DB >> 2747622

Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping.

J R Manhart1, K Kelly, B S Dudock, J D Palmer.   

Abstract

A complete physical map of the Codium fragile chloroplast genome was constructed and the locations of a number of chloroplast genes were determined. Several features of this circular genome are unusual. At 89 kb in size, it is the smallest chloroplast genome known. Unlike most chloroplast genomes it lacks any large repeat elements. The 8 kb spacer region between the 16S and 23S rRNA genes is the largest such spacer characterized to date in chloroplast DNA. This spacer region is also unusual in that it contains the rps12 gene or at least a portion thereof. Three regions polymorphic for size are present in the Codium chloroplast genome. The psbA and psbC genes map closely to one of these regions, another region is in the spacer between the 16S and 23S rRNA genes and the third is very close to or possibly within the 16S rRNA gene. The gene order in the Codium genome bears no marked resemblance to either the "consensus" vascular plant order or to that of any green algal or bryophyte genome.

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Year:  1989        PMID: 2747622     DOI: 10.1007/bf00334385

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN: 0026-8925


  14 in total

1.  Size of the Chloroplast Genome in Codium fragile.

Authors:  M F Hedberg; Y S Huang; M H Hommersand
Journal:  Science       Date:  1981-07-24       Impact factor: 47.728

2.  The Euglena gracilis chloroplast genome: structural features of a DNA region possibly carrying the single origin of DNA replication.

Authors:  B Schlunegger; E Stutz
Journal:  Curr Genet       Date:  1984-10       Impact factor: 3.886

3.  Covalently closed minicircular DNA associated with Acetabularia chloroplasts.

Authors:  B R Green
Journal:  Biochim Biophys Acta       Date:  1976-10-04

Review 4.  Comparative organization of chloroplast genomes.

Authors:  J D Palmer
Journal:  Annu Rev Genet       Date:  1985       Impact factor: 16.830

5.  Physical and gene mapping of chloroplast DNA from Atriplex triangularis and Cucumis sativa.

Authors:  J D Palmer
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

6.  Restriction endonuclease map of the chloroplast DNA of Chlamydomonas reinhardii.

Authors:  J D Rochaix
Journal:  J Mol Biol       Date:  1978-12-25       Impact factor: 5.469

7.  Trans-splicing in chloroplasts: the rps 12 loci of Nicotiana tabacum.

Authors:  M Hildebrand; R B Hallick; C W Passavant; D P Bourque
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

8.  Peculiar feature of the organization of rRNA genes of the Chlorella chloroplast DNA.

Authors:  T Yamada; M Shimaji
Journal:  Nucleic Acids Res       Date:  1986-05-12       Impact factor: 16.971

9.  Chloroplast DNA from the fern Osmunda cinnamomea: physical organization, gene localization and comparison to angiosperm.

Authors:  J D Palmer; D B Stein
Journal:  Curr Genet       Date:  1982-08       Impact factor: 3.886

10.  The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

Authors:  K Shinozaki; M Ohme; M Tanaka; T Wakasugi; N Hayashida; T Matsubayashi; N Zaita; J Chunwongse; J Obokata; K Yamaguchi-Shinozaki; C Ohto; K Torazawa; B Y Meng; M Sugita; H Deno; T Kamogashira; K Yamada; J Kusuda; F Takaiwa; A Kato; N Tohdoh; H Shimada; M Sugiura
Journal:  EMBO J       Date:  1986-09       Impact factor: 11.598

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  18 in total

1.  Mollusc-algal chloroplast endosymbiosis. Photosynthesis, thylakoid protein maintenance, and chloroplast gene expression continue for many months in the absence of the algal nucleus.

Authors:  B J Green; W Y Li; J R Manhart; T C Fox; E J Summer; R A Kennedy; S K Pierce; M E Rumpho
Journal:  Plant Physiol       Date:  2000-09       Impact factor: 8.340

2.  A 16 kb small single-copy region separates the plastid DNA inverted repeat of the unicellular red alga Cyanidium caldarium: physical mapping of the IR-flanking regions and nucleotide sequences of the psbD-psbC, rps16, 5S rRNA and rpl21 genes.

Authors:  U Maid; K Zetsche
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

3.  The cyanelle str operon from Cyanophora paradoxa: sequence analysis and phylogenetic implications.

Authors:  M Kraus; M Götz; W Löffelhardt
Journal:  Plant Mol Biol       Date:  1990-10       Impact factor: 4.076

4.  The chloroplast genome of an exsymbiotic Chlorella-like green alga.

Authors:  A M Schuster; J A Waddle; K Korth; R H Meints
Journal:  Plant Mol Biol       Date:  1990-05       Impact factor: 4.076

5.  Repetitive sequence-mediated rearrangements in Chlorella ellipsoidea chloroplast DNA: completion of nucleotide sequence of the large inverted repeat.

Authors:  T Yamada
Journal:  Curr Genet       Date:  1991-02       Impact factor: 3.886

6.  Structure and organization of rhodophyte and chromophyte plastid genomes: implications for the ancestry of plastids.

Authors:  M S Shivji; N Li; R A Cattolico
Journal:  Mol Gen Genet       Date:  1992-03

7.  Loss of transfer RNA genes from the plastid 16S-23S ribosomal RNA gene spacer in a parasitic plant.

Authors:  C F Wimpee; R Morgan; R L Wrobel
Journal:  Curr Genet       Date:  1992-04       Impact factor: 3.886

8.  Ribulose bisphosphate carboxylase in algae: synthesis, enzymology and evolution.

Authors:  S M Newman; R A Cattolico
Journal:  Photosynth Res       Date:  1990-11       Impact factor: 3.573

9.  Phylogenetic relationship of the green alga Nanochlorum eukaryotum deduced from its chloroplast rRNA sequences.

Authors:  M Schreiner; M Geisert; M Oed; J Arendes; U Güngerich; H J Breter; K Stüber; D Weinblum
Journal:  J Mol Evol       Date:  1995-04       Impact factor: 2.395

10.  Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas phi: evolutionary considerations.

Authors:  S E Douglas
Journal:  Curr Genet       Date:  1991-04       Impact factor: 3.886

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