Literature DB >> 36271218

Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching.

Cristobal Rodero1,2, Stefano Longobardi3, Christoph Augustin4,5, Marina Strocchi3, Gernot Plank4,5, Pablo Lamata6, Steven A Niederer3.   

Abstract

Previous patient-specific model calibration techniques have treated each patient independently, making the methods expensive for large-scale clinical adoption. In this work, we show how we can reuse simulations to accelerate the patient-specific model calibration pipeline. To represent anatomy, we used a Statistical Shape Model and to represent function, we ran electrophysiological simulations. We study the use of 14 biomarkers to calibrate the model, training one Gaussian Process Emulator (GPE) per biomarker. To fit the models, we followed a Bayesian History Matching (BHM) strategy, wherein each iteration a region of the parameter space is ruled out if the emulation with that set of parameter values produces is "implausible". We found that without running any extra simulations we can find 87.41% of the non-implausible parameter combinations. Moreover, we showed how reducing the uncertainty of the measurements from 10 to 5% can reduce the final parameter space by 6 orders of magnitude. This innovation allows for a model fitting technique, therefore reducing the computational load of future biomedical studies.
© 2022. The Author(s).

Entities:  

Keywords:  Gaussian process emulator; Heart model; In-silico trial; Statistical shape model; Uncertainty quantification; Virtual clinical trial

Year:  2022        PMID: 36271218     DOI: 10.1007/s10439-022-03095-9

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   4.219


  13 in total

1.  Personalising left-ventricular biophysical models of the heart using parametric physics-informed neural networks.

Authors:  Stefano Buoso; Thomas Joyce; Sebastian Kozerke
Journal:  Med Image Anal       Date:  2021-04-20       Impact factor: 8.545

2.  Fitting two human atrial cell models to experimental data using Bayesian history matching.

Authors:  Sam Coveney; Richard H Clayton
Journal:  Prog Biophys Mol Biol       Date:  2018-08-24       Impact factor: 3.667

3.  Geometrical factors affecting the interindividual variability of the ECG and the VCG.

Authors:  A van Oosterom; R Hoekema; G J Uijen
Journal:  J Electrocardiol       Date:  2000       Impact factor: 1.438

4.  Endocardial mapping in humans in sinus rhythm with normal left ventricles: activation patterns and characteristics of electrograms.

Authors:  D M Cassidy; J A Vassallo; F E Marchlinski; A E Buxton; W J Untereker; M E Josephson
Journal:  Circulation       Date:  1984-07       Impact factor: 29.690

5.  Efficient computation of electrograms and ECGs in human whole heart simulations using a reaction-eikonal model.

Authors:  Aurel Neic; Fernando O Campos; Anton J Prassl; Steven A Niederer; Martin J Bishop; Edward J Vigmond; Gernot Plank
Journal:  J Comput Phys       Date:  2017-10-01       Impact factor: 3.553

Review 6.  Patient-Specific Cardiovascular Computational Modeling: Diversity of Personalization and Challenges.

Authors:  Richard A Gray; Pras Pathmanathan
Journal:  J Cardiovasc Transl Res       Date:  2018-03-06       Impact factor: 4.132

7.  Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation.

Authors:  Christoph M Augustin; Aurel Neic; Manfred Liebmann; Anton J Prassl; Steven A Niederer; Gundolf Haase; Gernot Plank
Journal:  J Comput Phys       Date:  2016-01-15       Impact factor: 3.553

8.  Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?

Authors:  Ross H Johnstone; Eugene T Y Chang; Rémi Bardenet; Teun P de Boer; David J Gavaghan; Pras Pathmanathan; Richard H Clayton; Gary R Mirams
Journal:  J Mol Cell Cardiol       Date:  2015-12-02       Impact factor: 5.000

9.  Improved identifiability of myocardial material parameters by an energy-based cost function.

Authors:  Anastasia Nasopoulou; Anoop Shetty; Jack Lee; David Nordsletten; C Aldo Rinaldi; Pablo Lamata; Steven Niederer
Journal:  Biomech Model Mechanobiol       Date:  2017-02-10

10.  In silico identification of potential calcium dynamics and sarcomere targets for recovering left ventricular function in rat heart failure with preserved ejection fraction.

Authors:  Stefano Longobardi; Anna Sher; Steven A Niederer
Journal:  PLoS Comput Biol       Date:  2021-12-06       Impact factor: 4.475

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