| Literature DB >> 36140784 |
Saif Agha1,2, Simon P Turner3, Craig R G Lewis4, Suzanne Desire3, Rainer Roehe3, Andrea Doeschl-Wilson1.
Abstract
Reducing harmful aggressive behaviour remains a major challenge in pig production. Social network analysis (SNA) showed the potential in providing novel behavioural traits that describe the direct and indirect role of individual pigs in pen-level aggression. Our objectives were to (1) estimate the genetic parameters of these SNA traits, and (2) quantify the genetic associations between the SNA traits and commonly used performance measures: growth, feed intake, feed efficiency, and carcass traits. The animals were video recorded for 24 h post-mixing. The observed fighting behaviour of each animal was used as input for the SNA. A Bayesian approach was performed to estimate the genetic parameters of SNA traits and their association with the performance traits. The heritability estimates for all SNA traits ranged from 0.01 to 0.35. The genetic correlations between SNA and performance traits were non-significant, except for weighted degree with hot carcass weight, and for both betweenness and closeness centrality with test daily gain, final body weight, and hot carcass weight. Our results suggest that SNA traits are amenable for selective breeding. Integrating these traits with other behaviour and performance traits may potentially help in building up future strategies for simultaneously improving welfare and performance in commercial pig farms.Entities:
Keywords: aggressiveness; genetic parameters; pigs; social network analysis; welfare
Mesh:
Year: 2022 PMID: 36140784 PMCID: PMC9498370 DOI: 10.3390/genes13091616
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Definition of the social network analysis traits considered in this study.
| Measures | Definition | Interpretation |
|---|---|---|
| Degree centrality | The number of edges attached to a node. | The number of animals that a particular animal directly engaged with. |
| Weighted degree centrality | The sum of weights associated with every edge incident to the corresponding node. | The sum of the duration of the reciprocal fights that the focal animal was involved in. |
| Betweenness centrality | The number of shortest paths that pass through the considered node. | Measures the importance of the animal in connecting different subgroups of the pen engaging in aggression. |
| Closeness centrality | The average of the shortest path length between that node and all other nodes in the network. | Measures how ‘close’ an animal is to all other animals in a pen in terms of engaging in aggression. Animals that engage in aggression directly with many of their pen mates have high closeness centrality. |
| Eigenvector centrality | The connectivity of a node within its network, according to the degree centrality of the node and the degree centrality of the nodes that it connects with. | Takes into consideration both the degree centrality of the focal individual and the degree centrality of its opponents. |
| Clustering coefficient | The proportion of an individual node’s connections that are also directly connected with each other relative to the number of theoretically possible connections. | Quantifies what proportion of animals that the focal individual directly engages with also interact with each other, relative to the number of all possible aggressive interactions. |
Figure 1Example of a network. The pigs display the nodes, and the arrows display the edges. The thickness of the arrows represents the weight, i.e., the duration of the reciprocal fight. Red pig has the highest degree centrality, betweenness centrality, and closeness centrality in the pen. Yellow pig has the highest weighted degree centrality in the pen. Blue pig has the highest eigenvector centrality in the pen. Green pigs have the highest clustering coefficient in the pen.
Descriptive statistics of the transformed SNA traits and performance traits.
| Category | Trait | Mean | SD | Max | Min |
|---|---|---|---|---|---|
| SNA | Degree centrality | 0.12 | 0.13 | 1.00 | 0 |
| Weighted degree centrality | 2.30 | 5.92 | 58.4 | 0 | |
| Closeness centrality | 0.02 | 0.02 | 0.08 | 0 | |
| Eigenvector centrality | 0.17 | 0.31 | 1.00 | 0 | |
| Betweenness centrality | 0.06 | 0.10 | 0.63 | 0 | |
| Clustering coefficient | 0.09 | 0.21 | 1.00 | 0 | |
| Performance | TDG | 887.5 | 117.4 | 1198.1 | 523.4 |
| LDG | 695.9 | 75.10 | 889.5 | 435.2 | |
| DFI | 2.28 | 0.29 | 3.12 | 1.38 | |
| FE | 0.003 | 0.001 | 0.004 | 0.002 | |
| FBW | 120.11 | 12.03 | 155.00 | 84.00 | |
| HCW | 94.10 | 8.97 | 127.57 | 67.19 | |
| BF | 17.97 | 4.34 | 33.10 | 7.10 | |
| LD | 62.24 | 8.88 | 89.30 | 35.90 |
TDG = Test daily gain (g/d), LDG = lifetime daily gain (g/d), DFI = daily feed intake (g/d), FE = feed efficiency, FBW = final body weight (kg), HCW = hot carcass weight (kg), BF = back fat (mm), LD = loin depth (mm).
Posterior means of heritability (h2), the phenotypic proportions of the variance due to the environmental pen effects (c2), the phenotypic variances (Vp), and the 95% highest posterior density intervals (HPD95%) for social network analysis traits for aggressive behaviour.
| Trait | h2 | HPD95% | c2 | HPD95% | Vp | HPD95% | |||
|---|---|---|---|---|---|---|---|---|---|
| Degree | 0.13 | 0.016 | 0.276 | 0.27 | 0.118 | 0.439 | 0.020 | 0.016 | 0.026 |
| Weighted degree | 0.35 | 0.013 | 0.651 | 0.10 | 0.000 | 0.248 | 50.91 | 37.06 | 67.64 |
| Betweenness centrality | 0.17 | 0.003 | 0.417 | 0.27 | 0.124 | 0.426 | 0.026 | 0.020 | 0.031 |
| Closeness centrality | 0.01 | 0.000 | 0.029 | 0.80 | 0.724 | 0.871 | 0.003 | 0.002 | 0.004 |
| Eigenvector centrality | 0.10 | 0.003 | 0.283 | 0.12 | 0.015 | 0.231 | 0.121 | 0.102 | 0.141 |
| Clustering coefficient | 0.04 | 0.003 | 0.172 | 0.14 | 0.000 | 0.290 | 0.047 | 0.035 | 0.060 |
Posterior means of the genetic correlations and the 95% highest posterior density intervals (HPD95%) for social network analysis traits for aggressive behaviour 1.
| Trait | Weighted Degree | Betweenness Centrality | Closeness Centrality | Eigenvector Centrality | Clustering Coefficient |
|---|---|---|---|---|---|
| Degree | 0.33 (−1, 0.92) | 0.59 (−0.80, 1) | 0.55 (−0.69, 1) | −0.73 (−1, 0.65) | |
| Weighted degree | 0.10 (−0.97, 0.71) | ||||
| Betweenness | 0.78 (−0.03, 1) | 0.79 (−0.27, 1) | −0.55 (−1, 0.56) | ||
| Closeness | −0.70 (−1, 0.80) | ||||
| Eigenvector |
1 Bold font signifies correlation estimates with HPD95% that did not include zero.
Posterior means of the genetic correlations and the 95% highest posterior density intervals (HPD95%) between social network analysis traits and performance traits 1.
| Trait | Degree | Weighted Degree | Betweenness Centrality | Closeness Centrality | Eigenvector Centrality | Clustering Coefficient |
|---|---|---|---|---|---|---|
| TDG | −0.30 (−1, 0.96) | −0.05 (−0.95, 0.78) | 0.31 (−0.40, 0.99) | −0.79 (−1, 0.37) | ||
| LDG | −0.32 (−1, 0.95) | −0.05 (−0.89, 0.76) | −0.61 (−1, 0.18) | 0.18 (−0.61, 0.98) | −0.74 (−1, 0.59) | |
| DFI | −0.14 (−1, 0.94) | −0.15 (−0.95, 0.53) | −0.37 (−0.96, 0.46) | −0.63 (−1, 0.22) | −0.43 (−1, 0.26) | −0.83 (−1, 0.05) |
| FE | −0.07 (−1, 0.80) | −0.08 (−1, 0.71) | 0.34 (−0.47, 0.99) | 0.05 (−0.89, 0.99) | −0.61 (−1, 0.06) | −0.72 (−1, 0.35) |
| FBW | −0.30 (−1, 0.96) | −0.12 (−0.94, 0.57) | 0.31 (−0.40, 0.99) | −0.78 (−1, 0.38) | ||
| HCW | −0.31 (−1, 0.93) | −0.20 (−0.95, 0.50) | 0.18 (−0.62, 0.94) | −0.81 (−1, 0.16) | ||
| BF | −0.16 (−1, 0.90) | −0.59 (−0.97, 0.12) | 0.71 (−0.08, 1) | −0.26 (−0.93, 0.36) | −0.76 (−1, 0.28) | |
| LD | −0.13 (−1, 0.94) | 0.23 (−0.70, 0.92) | 0.03 (−0.65, 0.94) | 0.25 (−0.85, 1) | 0.44 (−0.22, 0.99) | −0.79 (−1, 0.13) |
TDG = Test daily gain (g/d), LDG = lifetime daily gain (g/d), DFI = daily feed intake (g/d), FE = feed efficiency, FBW = final body weight (kg), HCW = hot carcass weights (kg), BF = back fat (mm), LD = loin depth (mm). 1 Bold font signifies correlation estimates with HPD95% that did not include zero.