Literature DB >> 34982562

Using Machine Learning to Greatly Accelerate Path Integral Ab Initio Molecular Dynamics.

Chenghan Li1, Gregory A Voth1.   

Abstract

Ab initio molecular dynamics (AIMD) has become one of the most popular and robust approaches for modeling complicated chemical, liquid, and material systems. However, the formidable computational cost often limits its widespread application in simulations of the largest-scale systems. The situation becomes even more severe in cases where the hydrogen nuclei may be better described as quantized particles using a path integral representation. Here, we present a computational approach that combines machine learning with recent advances in path integral contraction schemes, and we achieve a 2 orders of magnitude acceleration over direct path integral AIMD simulation while at the same time maintaining its accuracy.

Entities:  

Year:  2022        PMID: 34982562      PMCID: PMC8864787          DOI: 10.1021/acs.jctc.1c01085

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  25 in total

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Authors:  Sharon Hammes-Schiffer
Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

2.  Communication: Multiple-timestep ab initio molecular dynamics with electron correlation.

Authors:  Ryan P Steele
Journal:  J Chem Phys       Date:  2013-07-07       Impact factor: 3.488

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Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

4.  On the Quantum Nature of the Shared Proton in Hydrogen Bonds

Authors: 
Journal:  Science       Date:  1997-02-07       Impact factor: 47.728

5.  Accelerating Ab Initio Path Integral Simulations via Imaginary Multiple-Timestepping.

Authors:  Xiaolu Cheng; Jonathan D Herr; Ryan P Steele
Journal:  J Chem Theory Comput       Date:  2016-03-25       Impact factor: 6.006

6.  Accelerated path-integral simulations using ring-polymer interpolation.

Authors:  Samuel J Buxton; Scott Habershon
Journal:  J Chem Phys       Date:  2017-12-14       Impact factor: 3.488

7.  Application of the SCC-DFTB method to neutral and protonated water clusters and bulk water.

Authors:  Puja Goyal; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2011-04-28       Impact factor: 2.991

8.  Decoding the spectroscopic features and time scales of aqueous proton defects.

Authors:  Joseph A Napoli; Ondrej Marsalek; Thomas E Markland
Journal:  J Chem Phys       Date:  2018-06-14       Impact factor: 3.488

9.  DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB).

Authors:  Michael Gaus; Qiang Cui; Marcus Elstner
Journal:  J Chem Theory Comput       Date:  2012-04-10       Impact factor: 6.006

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  2 in total

1.  Centroid Molecular Dynamics Can Be Greatly Accelerated through Neural Network Learned Centroid Forces Derived from Path Integral Molecular Dynamics.

Authors:  Timothy D Loose; Patrick G Sahrmann; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-14       Impact factor: 6.578

Review 2.  Coupled Multiphysics Modelling of Sensors for Chemical, Biomedical, and Environmental Applications with Focus on Smart Materials and Low-Dimensional Nanostructures.

Authors:  Sundeep Singh; Roderick Melnik
Journal:  Chemosensors (Basel)       Date:  2022-04-25
  2 in total

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