Literature DB >> 15836019

Chemical reaction rates from ring polymer molecular dynamics.

Ian R Craig1, David E Manolopoulos.   

Abstract

We show how the ring-polymer molecular dynamics method can be adapted to calculate approximate Kubo-transformed flux-side correlation functions, and hence rate coefficients for condensed phase reactions. An application of the method to the standard model for a chemical reaction in solution--a quartic double-well potential linearly coupled to a bath of harmonic oscillators--is found to give results of comparable accuracy to those of the classical Wigner model and the centroid molecular dynamics method. However, since the present method does not require that one evaluate the Wigner transform of a thermal flux operator or that one perform a separate path integral calculation for each molecular dynamics time step, we believe it will prove easier to apply to more general problems than either of these alternative techniques. We also present a (logarithmic) discretization scheme for the Ohmic bath in the system-bath model that gives converged results with just nine bath modes--a surprisingly small number for a model of a condensed phase reaction. Finally, we present some calculations of the transmission through an Eckart barrier which show that the present method provides a satisfactory (although not perfect) description of the deep quantum tunneling regime. Part of the reason for the success of the method is that it gives the exact quantum-mechanical rate constant for the transmission through a parabolic barrier, as we demonstrate analytically in the Appendix.

Entities:  

Year:  2005        PMID: 15836019     DOI: 10.1063/1.1850093

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  15 in total

1.  Car-Parrinello and path integral molecular dynamics study of the hydrogen bond in the acetic acid dimer in the gas phase.

Authors:  Piotr Durlak; Sławomir Berski; Zdzisław Latajka
Journal:  J Mol Model       Date:  2011-03-01       Impact factor: 1.810

2.  Finite temperature application of the corrected propagator method to reactive dynamics in a condensed-phase environment.

Authors:  David Gelman; Steven D Schwartz
Journal:  J Chem Phys       Date:  2011-01-21       Impact factor: 3.488

3.  An extension of stochastic hierarchy equations of motion for the equilibrium correlation functions.

Authors:  Yaling Ke; Yi Zhao
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

4.  Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules.

Authors:  Rui-Jie Xue; Adam Grofe; He Yin; Zexing Qu; Jiali Gao; Hui Li
Journal:  J Chem Theory Comput       Date:  2016-12-07       Impact factor: 6.006

5.  Full dimensional potential energy surface and low temperature dynamics of the H2CO + OH → HCO + H2O reaction.

Authors:  Alexandre Zanchet; Pablo Del Mazo; Alfredo Aguado; Octavio Roncero; Elena Jiménez; André Canosa; Marcelino Agúndez; José Cernicharo
Journal:  Phys Chem Chem Phys       Date:  2018-02-21       Impact factor: 3.676

6.  The strengths and limitations of effective centroid force models explored by studying isotopic effects in liquid water.

Authors:  Ying Yuan; Jicun Li; Xin-Zheng Li; Feng Wang
Journal:  J Chem Phys       Date:  2018-05-14       Impact factor: 3.488

7.  Quantum Roaming in the Complex-Forming Mechanism of the Reactions of OH with Formaldehyde and Methanol at Low Temperature and Zero Pressure: A Ring Polymer Molecular Dynamics Approach.

Authors:  Pablo Del Mazo-Sevillano; Alfredo Aguado; Elena Jiménez; Yury V Suleimanov; Octavio Roncero
Journal:  J Phys Chem Lett       Date:  2019-04-04       Impact factor: 6.475

8.  Zero- and high-pressure mechanisms in the complex forming reactions of OH with methanol and formaldehyde at low temperatures.

Authors:  Fedor Naumkin; Pablo Del Mazo-Sevillano; Alfredo Aguado; Yury V Suleimanov; Octavio Roncero
Journal:  ACS Earth Space Chem       Date:  2019-05-14       Impact factor: 3.475

9.  A Ring Polymer Molecular Dynamics Approach to Study the Transition between Statistical and Direct Mechanisms in the H2 + H3+ → H3+ + H2 Reaction.

Authors:  Yury V Suleimanov; Alfredo Aguado; Susana Gómez-Carrasco; Octavio Roncero
Journal:  J Phys Chem Lett       Date:  2018-04-12       Impact factor: 6.475

10.  Low temperature reaction dynamics for CH3OH + OH collisions on a new full dimensional potential energy surface.

Authors:  Octavio Roncero; Alexandre Zanchet; Alfredo Aguado
Journal:  Phys Chem Chem Phys       Date:  2018-10-17       Impact factor: 3.676

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