Literature DB >> 24952532

How to remove the spurious resonances from ring polymer molecular dynamics.

Mariana Rossi1, Michele Ceriotti2, David E Manolopoulos1.   

Abstract

Two of the most successful methods that are presently available for simulating the quantum dynamics of condensed phase systems are centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD). Despite their conceptual differences, practical implementations of these methods differ in just two respects: the choice of the Parrinello-Rahman mass matrix and whether or not a thermostat is applied to the internal modes of the ring polymer during the dynamics. Here, we explore a method which is halfway between the two approximations: we keep the path integral bead masses equal to the physical particle masses but attach a Langevin thermostat to the internal modes of the ring polymer during the dynamics. We justify this by showing analytically that the inclusion of an internal mode thermostat does not affect any of the established features of RPMD: thermostatted RPMD is equally valid with respect to everything that has actually been proven about the method as RPMD itself. In particular, because of the choice of bead masses, the resulting method is still optimum in the short-time limit, and the transition state approximation to its reaction rate theory remains closely related to the semiclassical instanton approximation in the deep quantum tunneling regime. In effect, there is a continuous family of methods with these properties, parameterised by the strength of the Langevin friction. Here, we explore numerically how the approximation to quantum dynamics depends on this friction, with a particular emphasis on vibrational spectroscopy. We find that a broad range of frictions approaching optimal damping give similar results, and that these results are immune to both the resonance problem of RPMD and the curvature problem of CMD.

Entities:  

Year:  2014        PMID: 24952532     DOI: 10.1063/1.4883861

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules.

Authors:  Rui-Jie Xue; Adam Grofe; He Yin; Zexing Qu; Jiali Gao; Hui Li
Journal:  J Chem Theory Comput       Date:  2016-12-07       Impact factor: 6.006

2.  Using Machine Learning to Greatly Accelerate Path Integral Ab Initio Molecular Dynamics.

Authors:  Chenghan Li; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-01-04       Impact factor: 6.006

3.  Coarse-Graining of Imaginary Time Feynman Path Integrals: Inclusion of Intramolecular Interactions and Bottom-up Force-Matching.

Authors:  Won Hee Ryu; Gregory A Voth
Journal:  J Phys Chem A       Date:  2022-08-25       Impact factor: 2.944

4.  Centroid Molecular Dynamics Can Be Greatly Accelerated through Neural Network Learned Centroid Forces Derived from Path Integral Molecular Dynamics.

Authors:  Timothy D Loose; Patrick G Sahrmann; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-14       Impact factor: 6.578

5.  Nuclear quantum effects on the dynamics and glass behavior of a monatomic liquid with two liquid states.

Authors:  Ali Eltareb; Gustavo E Lopez; Nicolas Giovambattista
Journal:  J Chem Phys       Date:  2022-05-28       Impact factor: 4.304

6.  Static and Dynamic Correlations in Water: Comparison of Classical Ab Initio Molecular Dynamics at Elevated Temperature with Path Integral Simulations at Ambient Temperature.

Authors:  Chenghan Li; Francesco Paesani; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-03-09       Impact factor: 6.578

7.  A generalized class of strongly stable and dimension-free T-RPMD integrators.

Authors:  Jorge L Rosa-Raíces; Jiace Sun; Nawaf Bou-Rabee; Thomas F Miller
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

Review 8.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

9.  Nuclear quantum effects on the thermodynamic, structural, and dynamical properties of water.

Authors:  Ali Eltareb; Gustavo E Lopez; Nicolas Giovambattista
Journal:  Phys Chem Chem Phys       Date:  2021-03-17       Impact factor: 3.945

10.  Characterization of a trans-trans Carbonic Acid-Fluoride Complex by Infrared Action Spectroscopy in Helium Nanodroplets.

Authors:  Daniel A Thomas; Eike Mucha; Maike Lettow; Gerard Meijer; Mariana Rossi; Gert von Helden
Journal:  J Am Chem Soc       Date:  2019-03-27       Impact factor: 15.419

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