| Literature DB >> 36101438 |
Manuel Tiburtini1, Giovanni Astuti2, Fabrizio Bartolucci3, Gabriele Casazza4, Lucia Varaldo4, Daniele De Luca5, Maria Vittoria Bottigliero5, Gianluigi Bacchetta6, Marco Porceddu6, Gianniantonio Domina7, Simone Orsenigo8, Lorenzo Peruzzi1.
Abstract
Three subspecies of Armeria arenaria are reported from Italy, two of which are considered endemic to the Apennines. The taxonomic value of these two taxa (A. arenaria subsp. marginata and A. arenaria subsp. apennina) is unclear. Moreover, the relationships between A. arenaria subsp. praecox and Northern Italian populations-currently ascribed to A. arenaria subsp. arenaria-have never been addressed. Accordingly, we used an integrated taxonomic approach, including morphometry, seed morpho-colorimetry, karyology, molecular systematics (psbA-trnH, trnQ-rps16, trnF-trnL, trnL-rpl32, and ITS region), and comparative niche analysis. According to our results, French-Northern Italian populations are clearly distinct from Apennine populations. In the first group, there is evidence which allows the recognition of A. arenaria s.str. (not occurring in Italy) and A. arenaria subsp. praecox. In the second group, the two putative taxa endemic to the Northern Apennines cannot be separated, so a single subspecies is here recognized: A. arenaria subsp. marginata.Entities:
Keywords: endemism; image analysis; molecular analysis; morphometrics; niche similarity; nomenclature
Year: 2022 PMID: 36101438 PMCID: PMC9312046 DOI: 10.3390/biology11071060
Source DB: PubMed Journal: Biology (Basel) ISSN: 2079-7737
Taxa and populations of Armeria arenaria sampled in this study, according to the current taxonomic hypothesis [17]. “Code” corresponds to population acronyms used elsewhere in the manuscript. * = type locality. “Voucher” refers to the specimens stored at Herbarium Horti Botanici Pisani (PI) and freely available for consultation at http://erbario.unipi.it/, accessed on 10 July 2022. See also Figure 6 for the geographical localisation of the sampled populations.
| Code | Current Taxonomic Hypothesis | Population | Voucher |
|
|---|---|---|---|---|
| MB * | Italy, Emilia–Romagna, between M. Marmagna & M. Braiola (WGS84: 44.401250 N, 9.994250 E) | 20 | ||
| MC | Italy, Emilia–Romagna, Monte Cusna (WGS84: 44.288194 N, 0.390055 E) | 20 | ||
| MP | Italy, Emilia–Romagna, Monte Prinzera (WGS84: 44.640833 N, 10.083772 E) | 20 | ||
| BO | Italy, Emilia–Romagna, Monte Tre Abati, loc. Bobbio (WGS84: 44.752425 N, 9.436694 E) | 14 | ||
| BR | Italy, Val d’Aosta, Brusson (WGS84: 45.738166 N, 7.754111 E) | 20 | ||
| FB * | France, Île–de–France, Fontainebleau (WGS84: 48.437194 N, 2.690166 E) | 23 | ||
| GA | Italy, Lombardia, Gambolò (WGS84: 45.268611 N, 8.961027 E) | 18 | ||
| PS | Italy, Lombardia, Piana di Salmezza (WGS84: 45.782583 N, 9.732277 E) | 20 | ||
| TV | Italy, Piemonte, Terme di Valdieri (WGS84: 44.204083 N, 7.265000 E) | 20 | ||
| AA | Italy, Toscana, Alpi Apuane (WGS84: 44.124166 N, 10.212000 E) | 14 | ||
| LA * | Italy, Emilia–Romagna, Libro Aperto (WGS84: 44.157402 N, 10.712021 E) | 20 | ||
| LL * | France, Hautes Alpes, Le Lauzet (WGS84: 44.980166 N, 6.499611 E) | 20 |
Morphological characters studied in Armeria arenaria. QC = quantitative continuous, QD = quantitative discrete, CN = nominal, BI = binary, CO = ordered factor.
| Character Name | Description of the Character | Type | Tool |
|---|---|---|---|
| SCAB | Calyx awns scabrous (yes/no) | BI | Stereo |
| AWN | Awn presence on the calyx’s limb (yes/no) | BI | Stereo |
| CALYX_HAIRINESS | Calyx hairiness (holotrichous/pleurotrichous) | BI | Stereo |
| CALYX_VEINS | Number of calyx veins with hairs (10/5) | BI | Stereo |
| CAP_SHAPE | Shape of capitulum (hemispherical/subspherical) | BI | Stereo |
| DIMORP | Leaf dimorphism (yes/no) | BI | Stereo |
| INNER_SPI_BRACT_HAIR | Presence of hairs on inner spikelet bract (yes/no) | BI | Stereo |
| MAR_SUM_LEAF | Margin of the summer leaf (hyaline/dentate) | BI | Stereo |
| MAR_WIN_LEAF | Margin of the winter leaf (hyaline/dentate) | BI | Stereo |
| OUTER_SPI_BRACT_HAIR | Presence of hairs on the outer spikelet bract (yes/no) | BI | Stereo |
| INNER_SPI_BRACT_APEX | Shape of the inner spikelet bract apex (crenulate/undulate) | BI | Stereo |
| OUT_SPI_BRACT_APEX | Shape of the outer spikelet bract apex (crenulate/undulate) | BI | Stereo |
| SUM_LEAF_APEX | Shape of the summer leaf apex (acute/cucullate) | BI | Stereo |
| VEINS_HAIRS | Presence of hairs along the leaf veins (yes/no) | BI | Stereo |
| WIN_LEAF_APEX | Shape of the winter leaf apex (acute/cucullate) | BI | Stereo |
| COL_INV | Involucre colour (green/variegated/reddish/dry) | CN | Stereo |
| COL_PET | Petal colour (white/pink/fuchsia) | CN | Stereo |
| GEN_SHAPE_OUT_INV_BRACT | Shape of the outer involucral bract (deltate < triangular < strictly triangular) | CO | Stereo |
| SHAPE_APEX_INN_INV_BRACT | Shape of the inner involucral bract apex (round < acute < mucronate < apiculate) | CO | Stereo |
| SHAPE_APEX_INT_INV_BRACT | Shape of the intermediate involucral bract apex (round < acute < mucronate < apiculate) | CO | Stereo |
| SHAPE_APEX_OUT_INV_BRACT | Shape of the outer involucral bract apex (acute < mucronate < apiculate < acuminated < subulate < long subulate) | CO | Stereo |
| ANG_SUM_TIP | Summer leaf tip angle (°) | QC | Fiji |
| ANG_WIN_TIP | Winter leaf tip angle (°) | QC | Fiji |
| AWN_LENG | Awn length (mm) | QC | Fiji |
| DIAM_CAP | Capitulum diameter (mm) | QC | Calliper |
| HEIGTH | Plant height (mm) | QC | Ruler |
| LENG_CAL _PED | Calyx pedicel length (mm) | QC | Fiji |
| LENG_CAL_TUBE | Calyx tube length (mm) | QC | Fiji |
| LENG_INNER_INV_BRACT | Inner involucral bract length (mm) | QC | Calliper |
| LENG_INNER_SPI_BRACLE | Inner spikelet bracteole length (mm) | QC | Calliper |
| LENG_INNER_SPI_BRACT | Inner spikelet bract length (mm) | QC | Calliper |
| LENG_INTER_INV_BRACT | Intermediate involucral bract length (mm) | QC | Calliper |
| LENG_OUT_INV_BRACT | Outer involucral bract length (mm) | QC | Calliper |
| LENG_OUTER_SPI_BRACLE | Outer spikelet bracteole length (mm) | QC | Calliper |
| LENG_OUTER_SPI_BRACT | Outer spikelet bract length (mm) | QC | Calliper |
| LENG_SUM_LEAF | Summer leaf length (mm) | QC | Ruler |
| LENG_WIN_LEAF | Winter leaf length (mm) | QC | Ruler |
| LIMB_LENG | Limb length (mm) | QC | Fiji |
| SCA_DIAM | Scape diameter at 1 cm from the base (mm) | QC | Calliper |
| SCA_LENG | Scape length (mm) | QC | Ruler |
| SHEATH_LENG | Sheath length (mm) | QC | Calliper |
| WIDTH_CAL_TUBE | Calyx tube width below the limb (mm) | QC | Fiji |
| WIDTH_IAL_SUM | Width of the hyaline margin in summer leaf (mm) | QC | Fiji |
| WIDTH_IAL_WIN | Width of the hyaline margin in winter leaf (mm) | QC | Fiji |
| WIDTH_INNER_INV_BRACT | Inner involucral bract width at the middle (mm) | QC | Calliper |
| WIDTH_INNER_SPI_ BRACT | Inner spikelet bract width at the middle (mm) | QC | Calliper |
| WIDTH_INNER_SPI_BRACLE | Inner spikelet bracteole width at the middle (mm) | QC | Calliper |
| WIDTH_INTER_INV_BRACT | Intermediate involucral bract width at the middle (mm) | QC | Calliper |
| WIDTH_OUT_INV_BRACT | Outer involucral bract width at the base (mm) | QC | Calliper |
| WIDTH_OUTER_SPI_ BRACT | Outer spikelet bract length at the middle (mm) | QC | Calliper |
| WIDTH_OUTER_SPI_BRATLE | Outer spikelet bracteole width at the middle (mm) | QC | Calliper |
| WIDTH_SUM_LEAF | Width of the summer leaf at the middle (mm) | QC | Calliper |
| WIDTH_WIN_LEAF | Width of the winter leaf at the middle (mm) | QC | Calliper |
| N_ WIN_VEINS | Number of veins (with sclerenchyma) of winter leaf | QD | Microscope |
| N_INV_BRACT | Number of involucral bracts | QD | — |
| N_SUM_VEINS | Number of veins (with sclerenchyma) of summer leaf | QD | Microscope |
| SCAP_NUM | Number of scapes | QD | — |
Figure 1PCoA based on the 49 morphological characters measured in Armeria arenaria populations. Solid symbols represent individuals from type localities of the four taxa studied. AA = Apuan Alps, N Apennines; BO = Bobbio, N Apennines; BR = Brusson, Pennine Alps; FB = Fontainebleau, Île–de–France; GA = Gambolò, West Po Valley; LA = Libro Aperto; N Apennines; LL = Le Lauzet, Dauphiné Alps; MB = Marmagna–Braiola, N Apennines; MC = Monte Cusna, N Apennines; MP = Monte Prinzera, N Apennines; PS = Piana di Salmezza, Lombard Prealps; TV = Terme di Valdieri, Maritime Alps. Further population details are provided in Table 1 and Figure 6.
Figure 2Heatmap of the pairwise comparisons of the 49 morphological characters for which we found statistically significant differences between population pairs in Armeria arenaria. Numbers inside the cells indicate the sum of statistically different characters. Colours are a function of the number of characters showing significant differences: whitish–yellow colours indicate that the pair is almost identical, whereas orange–red colours indicate that the pair shows several differences. AA = Apuan Alps, N Apennines; BO = Bobbio, N Apennines; BR = Brusson, Pennine Alps; FB = Fontainebleau, Île–de–France; GA = Gambolò, West Po Valley; LA = Libro Aperto; N Apennines; LL = Le Lauzet, Dauphiné Alps; MB = Marmagna–Braiola, N Apennines; MC = Monte Cusna, N Apennines; MP = Monte Prinzera, N Apennines; PS = Piana di Salmezza, Lombard Prealps; TV = Terme di Valdieri, Maritime Alps. Further population details are provided in Table 1 and Figure 6.
Confusion matrix of the LDA based on the 49 morphometric characters, assuming the current taxonomic hypothesis of Armeria arenaria subspecies as a priori groups, as proposed by Arrigoni [17]. Rows show the membership of each a priori established group, whereas columns show the membership predicted by the classification model.
|
|
|
|
| Total | |
|---|---|---|---|---|---|
|
| 46 | 5 | 8 | 0 | 59 |
|
| 2 | 105 | 1 | 2 | 110 |
|
| 6 | 0 | 28 | 0 | 34 |
|
| 0 | 5 | 0 | 15 | 20 |
| Total | 54 | 115 | 37 | 17 | 223 |
Confusion matrix of the LDA based on the seed morpho–colorimetric dataset (percentages of correct classification), assuming the current taxonomic hypothesis of Armeria arenaria subspecies as a priori groups, as proposed by Arrigoni [17]. Rows show the membership of each a priori established group, whereas columns show the membership predicted by the classification model.
|
|
|
|
| Total | |
|---|---|---|---|---|---|
|
| 36.3 | 30 | 15 | 18.7 | 100 |
|
| 18.5 | 71.5 | 7.5 | 2.5 | 100 |
|
| 15.5 | 8.2 | 48.7 | 27.7 | 100 |
|
| 20 | — | 15 | 65 | 100 |
Confusion matrix of the LDA based on the seed morpho–colorimetric dataset (percentages of correct classification), assuming “arenarioid” and “marginatoid” groups for Armeria arenaria populations. Rows show the membership of each a priori established group, whereas columns show the membership predicted by the classification model.
| Group | Arenarioid | Marginatoid | Total |
|---|---|---|---|
| Arenarioid | 87.4 | 12.6 | 100 |
| Marginatoid | 16.3 | 83.3 | 100 |
Confusion matrix of the LDA based on the seed morpho–colorimetric dataset (percentages of correct classification), according to the alternative grouping hypotheses I and II for Armeria arenaria populations. Rows show the membership of each a priori established group, whereas columns show the membership predicted by the classification model.
| Groupings | Marginatoid | Arenarioid (LL Excluded) | LL | Total | |
|---|---|---|---|---|---|
| Grouping hypothesis I | Marginatoid | 81.3 | 12.3 | 6.5 | 100 |
| Arenarioid (LL excluded) | 13.1 | 52.3 | 34.6 | 100 | |
| LL | 1 | 21 | 78.0 | 100 | |
|
|
|
|
| ||
| Grouping hypothesis II | Marginatoid | 81.5 | 18.5 | — | 100 |
| Arenarioid (FB excluded) | 13.3 | 84.1 | 2.6 | 100 | |
| FB | — | 9 | 91.0 | 100 | |
Figure 3Graphical representation of the linear discriminant analysis (LDA) for the alternative grouping hypothesis for Armeria arenaria populations. (a) Grouping hypothesis I; (b) Grouping hypothesis II. FB = Fontainebleau, Île–de–France; LL = Le Lauzet, Dauphiné Alps.
Figure 4Scatterplot of the two karyotype asymmetry indices MCA vs. CVCL in Armeria arenaria. Accessions are enclosed by convex hulls according to grouping hypothesis II derived from the morphometric and seed morpho–colorimetric analysis, which sees LL as belonging to the same group as all the other Northern Italian arenarioid populations against the single population FB (which corresponds to A. arenaria s.str.). Symbols of populations as in Figure 1. FB = Fontainebleau, Île–de–France.
Figure 5Bayesian unrooted consensus phylogenetic tree (concatenated dataset) of Armeria arenaria populations. AA = Apuan Alps, N Apennines; BO = Bobbio, N Apennines; BR = Brusson, Pennine Alps; FB = Fontainebleau, Île–de–France; GA = Gambolò, West Po Valley; LA = Libro Aperto; N Apennines; LL = Le Lauzet, Dauphiné Alps; MB = Marmagna–Braiola, N Apennines; MC = Monte Cusna, N Apennines; MP = Monte Prinzera, N Apennines; PS = Piana di Salmezza, Lombard Prealps; TV = Terme di Valdieri, Maritime Alps. Further population details are provided in Table 1 and Figure 6.
Results of niche similarity tests in environmental spaces among the different taxa and circumscription hypotheses of Armeria arenaria. Backgrounds were defined by applying 10 km buffer zones around the occurrence points. Current taxonomic hypothesis as stated by Arrigoni [17], (I) = first alternative grouping hypothesis, (II) = second alternative grouping hypothesis. ns = not significant.
|
| subsp. |
|
|
|
|---|---|---|---|---|
| Current taxonomic hypothesis |
| 0.036 ns/ns | ||
|
| 0.041 ns/ns | 0.044 ns/ns | ||
|
| 0.006 ns/ns | 0.000 ns/ns | 0.208 ns/ns | |
| Grouping hypothesis I |
| 0.036 ns/ns | ||
|
| 0.033 ns/ns | 0.012 ns/ns | ||
| Grouping hypothesis II |
| 0.005 ns/ns | ||
|
| 0.000 ns/ns | 0.107 ns/ns |
Figure 6Distribution based on 81 herbarium specimens, including the localities sampled in this study, of Armeria arenaria subsp. arenaria, A. arenaria subsp. marginata, and A. arenaria subsp. praecox, as newly circumscribed. Solid arrows indicate type localities of the three taxa listed in the legend at the top–left corner on the map, whereas the crosshatched arrow indicates the type locality of A. arenaria subsp. apennina. Population codes as in Table 1.