Literature DB >> 22847109

jModelTest 2: more models, new heuristics and parallel computing.

Diego Darriba, Guillermo L Taboada, Ramón Doallo, David Posada.   

Abstract

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Year:  2012        PMID： 22847109      PMCID： PMC4594756          DOI： 10.1038/nmeth.2109

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.

Authors:  David Posada; Thomas R Buckley
Journal:  Syst Biol       Date:  2004-10       Impact factor: 15.683

3.  PhyloWidget: web-based visualizations for the tree of life.

Authors:  Gregory E Jordan; William H Piel
Journal:  Bioinformatics       Date:  2008-05-16       Impact factor: 6.937

4.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

5.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

6.  ALTER: program-oriented conversion of DNA and protein alignments.

Authors:  Daniel Glez-Peña; Daniel Gómez-Blanco; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David Posada
Journal:  Nucleic Acids Res       Date:  2010-05-03       Impact factor: 16.971
  6 in total
  2000 in total

1.  A re-evaluation of diversity of the Aporocotylidae Odhner, 1912 in Siganus fuscescens (Houttuyn) (Perciformes: Siganidae) and associated species.

Authors:  Xena Brooks; Thomas H Cribb; Russell Q-Y Yong; Scott C Cutmore
Journal:  Syst Parasitol       Date:  2017-08-02       Impact factor: 1.431

2.  Mitochondrial DNA variability to explore the relationship complexity of Schizothoracine (Teleostei: Cyprinidae).

Authors:  Syed Mudasir Ahmad; Farooz Ahmad Bhat; Masood-Ul Hassan Balkhi; Bilal Ahmad Bhat
Journal:  Genetica       Date:  2014-11-04       Impact factor: 1.082

3.  Evaluation of haplotype diversity of Achatina fulica (Lissachatina) [Bowdich] from Indian sub-continent by means of 16S rDNA sequence and its phylogenetic relationships with other global populations.

Authors:  Vijaya Sai Ayyagari; Krupanidhi Sreerama
Journal:  3 Biotech       Date:  2017-07-18       Impact factor: 2.406

4.  The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification.

Authors:  Kelly A Shepherd; Brendan J Lepschi; Eden A Johnson; Andrew G Gardner; Emily B Sessa; Rachel S Jabaily
Journal:  PhytoKeys       Date:  2020-07-07       Impact factor: 1.635

5.  DNA barcoding and species delimitation of the Old World tooth-carps, family Aphaniidae Hoedeman, 1949 (Teleostei: Cyprinodontiformes).

Authors:  Hamid Reza Esmaeili; Azad Teimori; Fatah Zarei; Golnaz Sayyadzadeh
Journal:  PLoS One       Date:  2020-04-16       Impact factor: 3.240

6.  An outbreak in intravenous drug users due to USA300 Latin-American variant community-acquired methicillin-resistant Staphylococcus aureus in France as early as 2007.

Authors:  M Sassi; B Felden; M Revest; P Tattevin; Y Augagneur; P-Y Donnio
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-09-02       Impact factor: 3.267

7.  Two new and one known species of Tergestia Stossich, 1899 (Trematoda: Fellodistomidae) with novel molecular characterisation for the genus.

Authors:  Nicholas Q-X Wee; Scott C Cutmore; Russell Q-Y Yong; Thomas H Cribb
Journal:  Syst Parasitol       Date:  2017-09-02       Impact factor: 1.431

8.  Species of Apatemon Szidat, 1928 and Australapatemon Sudarikov, 1959 (Trematoda: Strigeidae) from New Zealand: linking and characterising life cycle stages with morphology and molecules.

Authors:  Isabel Blasco-Costa; Robert Poulin; Bronwen Presswell
Journal:  Parasitol Res       Date:  2015-09-18       Impact factor: 2.289

9.  A House for Two--Double Bacterial Infection in Euplotes woodruffi Sq1 (Ciliophora, Euplotia) Sampled in Southeastern Brazil.

Authors:  Marcus V X Senra; Roberto J P Dias; Michele Castelli; Inácio D Silva-Neto; Franco Verni; Carlos A G Soares; Giulio Petroni
Journal:  Microb Ecol       Date:  2015-09-17       Impact factor: 4.552

10.  Dengue viruses cluster antigenically but not as discrete serotypes.

Authors:  Leah C Katzelnick; Judith M Fonville; Gregory D Gromowski; Jose Bustos Arriaga; Angela Green; Sarah L James; Louis Lau; Magelda Montoya; Chunling Wang; Laura A VanBlargan; Colin A Russell; Hlaing Myat Thu; Theodore C Pierson; Philippe Buchy; John G Aaskov; Jorge L Muñoz-Jordán; Nikos Vasilakis; Robert V Gibbons; Robert B Tesh; Albert D M E Osterhaus; Ron A M Fouchier; Anna Durbin; Cameron P Simmons; Edward C Holmes; Eva Harris; Stephen S Whitehead; Derek J Smith
Journal:  Science       Date:  2015-09-18       Impact factor: 47.728
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