Literature DB >> 7288891

Evolutionary trees from DNA sequences: a maximum likelihood approach.

J Felsenstein.   

Abstract

The application of maximum likelihood techniques to the estimation of evolutionary trees from nucleic acid sequence data is discussed. A computationally feasible method for finding such maximum likelihood estimates is developed, and a computer program is available. This method has advantages over the traditional parsimony algorithms, which can give misleading results if rates of evolution differ in different lineages. It also allows the testing of hypotheses about the constancy of evolutionary rates by likelihood ratio tests, and gives rough indication of the error of ;the estimate of the tree.

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Year:  1981        PMID: 7288891     DOI: 10.1007/BF01734359

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  9 in total

1.  A new estimate of sequence divergence of mitochondrial DNA using restriction endonuclease mappings.

Authors:  N Kaplan; C H Langley
Journal:  J Mol Evol       Date:  1979-11       Impact factor: 2.395

2.  Estimation of time of divergence from phylogenetic studies.

Authors:  R Chakraborty
Journal:  Can J Genet Cytol       Date:  1977-06

3.  Are evolutionary rates really variable?

Authors:  J H Gillespie; C H Langley
Journal:  J Mol Evol       Date:  1979-06-08       Impact factor: 2.395

4.  An examination of the constancy of the rate of molecular evolution.

Authors:  C H Langley; W M Fitch
Journal:  J Mol Evol       Date:  1974       Impact factor: 2.395

5.  Statistical estimation of parameters in a phylogenetic tree using a dynamic model of the substitutional process.

Authors:  R L Kashyap; S Subas
Journal:  J Theor Biol       Date:  1974-09       Impact factor: 2.691

6.  A general model for the genetic analysis of pedigree data.

Authors:  R C Elston; J Stewart
Journal:  Hum Hered       Date:  1971       Impact factor: 0.444

Review 7.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

8.  Theoretical foundations for a quantitative approach to paleogenetics. Part I: DNA.

Authors:  R Holmquist
Journal:  J Mol Evol       Date:  1971       Impact factor: 2.395

9.  Collection of published 5S and 5.8S RNA sequences and their precursors.

Authors:  V A Erdmann
Journal:  Nucleic Acids Res       Date:  1979-01       Impact factor: 16.971

  9 in total
  2000 in total

1.  The RDP (Ribosomal Database Project) continues.

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods.

Authors:  N J Savill; D C Hoyle; P G Higgs
Journal:  Genetics       Date:  2001-01       Impact factor: 4.562

3.  A phylogeny of the land snails (Gastropoda: Pulmonata).

Authors:  C M Wade; P B Mordan; B Clarke
Journal:  Proc Biol Sci       Date:  2001-02-22       Impact factor: 5.349

4.  Phylogenetic characterization of genotype 4 hepatitis C virus isolates from Argentina.

Authors:  V Alfonso; D Flichman; S Sookoian; V A Mbayed; R H Campos
Journal:  J Clin Microbiol       Date:  2001-05       Impact factor: 5.948

5.  Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus.

Authors:  M J Gibbs; G F Weiller
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

6.  Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors:  C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

7.  Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms.

Authors:  C A Di Meo; A E Wilbur; W E Holben; R A Feldman; R C Vrijenhoek; S C Cary
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

8.  Endosymbiotic microbiota of the bamboo pseudococcid Antonina crawii (Insecta, Homoptera).

Authors:  T Fukatsu; N Nikoh
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

9.  Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes.

Authors:  H Dang; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

10.  A compound poisson process for relaxing the molecular clock.

Authors:  J P Huelsenbeck; B Larget; D Swofford
Journal:  Genetics       Date:  2000-04       Impact factor: 4.562

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