Literature DB >> 36085333

Non-radiative deactivation of excited cytosine: probing of different DFT functionals and basis sets in solvents with different polarity.

T D Cherneva1, M M Todorova1, R I Bakalska1, E Horkel2, V B Delchev3.   

Abstract

The vertical excitation and emission energies of the cytosine oxo-amino form were calculated at the TD DFT level of theory with several functionals, basis sets, and solvents with different polarity (PCM). They were compared with the experimental UV absorption and fluorescence maxima, revealing that the minimal deviation of the vertical excitation energies from the of UV absorption maxima can be achieved when the hybrid functional B3LYP is applied within the calculations. Regular correlations like curves with saturation between the vertical excitation/emission energies and the dielectric constants were registered. The relaxation of the 1ππ* excited state through an ethylene-like conical intersection S0/S1 should occur through decrease of the decay rate (commented qualitatively here) with the rise of the solvent polarity.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Absorption spectra; DFT computations; Emission energies; Excited states; Vertical excitation energies

Mesh:

Substances:

Year:  2022        PMID: 36085333     DOI: 10.1007/s00894-022-05313-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   2.172


  26 in total

Review 1.  Ultrafast excited-state dynamics in nucleic acids.

Authors:  Carlos E Crespo-Hernández; Boiko Cohen; Patrick M Hare; Bern Kohler
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

2.  TDDFT investigation on nucleic acid bases: comparison with experiments and standard approach.

Authors:  M K Shukla; Jerzy Leszczynski
Journal:  J Comput Chem       Date:  2004-04-15       Impact factor: 3.376

Review 3.  Nucleic acid-guided assembly of aromatic chromophores.

Authors:  Vladimir L Malinovskii; Daniel Wenger; Robert Häner
Journal:  Chem Soc Rev       Date:  2009-12-08       Impact factor: 54.564

4.  Unified model for the ultrafast decay of pyrimidine nucleobases.

Authors:  Manuela Merchán; Remedios González-Luque; Teresa Climent; Luis Serrano-Andrés; Elena Rodríguez; Mar Reguero; Daniel Peláez
Journal:  J Phys Chem B       Date:  2006-12-28       Impact factor: 2.991

5.  Three-state conical intersections in nucleic acid bases.

Authors:  Spiridoula Matsika
Journal:  J Phys Chem A       Date:  2005-08-25       Impact factor: 2.781

6.  Tautomers of cytosine and their excited electronic states: a matrix isolation spectroscopic and quantum chemical study.

Authors:  Gábor Bazsó; György Tarczay; Géza Fogarasi; Péter G Szalay
Journal:  Phys Chem Chem Phys       Date:  2011-01-14       Impact factor: 3.676

7.  Remarkable effects of solvent and substitution on the photo-dynamics of cytosine: a femtosecond broadband time-resolved fluorescence and transient absorption study.

Authors:  Chensheng Ma; Chopen Chan-Wut Cheng; Chris Tsz-Leung Chan; Ruth Chau-Ting Chan; Wai-Ming Kwok
Journal:  Phys Chem Chem Phys       Date:  2015-07-15       Impact factor: 3.676

8.  Disentangling intrinsic ultrafast excited-state dynamics of cytosine tautomers.

Authors:  Jr-Wei Ho; Hung-Chien Yen; Wei-Kuang Chou; Chih-Nan Weng; Li-Hao Cheng; Hui-Qi Shi; Szu-Hsueh Lai; Po-Yuan Cheng
Journal:  J Phys Chem A       Date:  2011-07-08       Impact factor: 2.781

9.  Photophysical properties of pyrrolocytosine, a cytosine fluorescent base analogue.

Authors:  Quynh L Nguyen; Vincent A Spata; Spiridoula Matsika
Journal:  Phys Chem Chem Phys       Date:  2016-07-27       Impact factor: 3.676

10.  Relaxation Mechanisms of 5-Azacytosine.

Authors:  Angelo Giussani; Manuela Merchán; João Paulo Gobbo; Antonio Carlos Borin
Journal:  J Chem Theory Comput       Date:  2014-08-28       Impact factor: 6.006

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