Literature DB >> 16834123

Three-state conical intersections in nucleic acid bases.

Spiridoula Matsika1.   

Abstract

The involvement of three-state conical intersections in the photophysics and radiationless decay processes of the nucleobases has been investigated using multireference configuration interaction methods. Three-state conical intersections have been located for the pyrimidine base, uracil, and the purine base, adenine. In uracil, a three-state degeneracy between the S(0), S(1), and S(2) states has been located at 6.2 eV above the ground-state minimum energy. This energy is 0.4 eV higher than vertical excitation to S(2) and at least 1.3 eV higher than the two-state conical intersections found previously. In adenine, two different three-state degeneracies between the S(1), S(2), and S(3) states have been located at energies close to the vertical excitation energies. The energetics of these three-state conical intersections suggest they can play a role in a radiationless decay pathway present in adenine. The existence of two different seams of three-state conical intersections indicates that these features are common and complicate the potential energy surfaces of adenine and possibly many other aromatic molecules.

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Year:  2005        PMID: 16834123     DOI: 10.1021/jp0513622

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Comparative study of the relaxation mechanisms of the excited states of cytosine and isocytosine.

Authors:  Rumyana I Bakalska; Vassil B Delchev
Journal:  J Mol Model       Date:  2012-07-10       Impact factor: 1.810

2.  Primary processes underlying the photostability of isolated DNA bases: adenine.

Authors:  Helmut Satzger; Dave Townsend; Marek Z Zgierski; Serguei Patchkovskii; Susanne Ullrich; Albert Stolow
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-27       Impact factor: 11.205

3.  Relaxation mechanisms of UV-photoexcited DNA and RNA nucleobases.

Authors:  Mario Barbatti; Adélia J A Aquino; Jaroslaw J Szymczak; Dana Nachtigallová; Pavel Hobza; Hans Lischka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-29       Impact factor: 11.205

4.  Photoinduced phenomena in water solution of melamine explaining the photostability of the compound.

Authors:  Vassil B Delchev
Journal:  J Mol Model       Date:  2021-06-09       Impact factor: 1.810

5.  Non-radiative deactivation of excited cytosine: probing of different DFT functionals and basis sets in solvents with different polarity.

Authors:  T D Cherneva; M M Todorova; R I Bakalska; E Horkel; V B Delchev
Journal:  J Mol Model       Date:  2022-09-09       Impact factor: 2.172

6.  Direct probing of solvent accessibility and mobility at the binding interface of polymerase (Dpo4)-DNA complex.

Authors:  Yangzhong Qin; Yi Yang; Luyuan Zhang; Jason D Fowler; Weihong Qiu; Lijuan Wang; Zucai Suo; Dongping Zhong
Journal:  J Phys Chem A       Date:  2013-12-05       Impact factor: 2.781

7.  Excited-State Properties and Relaxation Pathways of Selenium-Substituted Guanine Nucleobase in Aqueous Solution and DNA Duplex.

Authors:  Ye-Guang Fang; Danillo Valverde; Sebastian Mai; Sylvio Canuto; Antonio Carlos Borin; Ganglong Cui; Leticia González
Journal:  J Phys Chem B       Date:  2021-02-11       Impact factor: 2.991

8.  Ultrafast Intersystem Crossing Dynamics of 6-Selenoguanine in Water.

Authors:  Danillo Valverde; Sebastian Mai; Sylvio Canuto; Antonio Carlos Borin; Leticia González
Journal:  JACS Au       Date:  2022-06-28
  8 in total

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