Literature DB >> 36072522

Crystal structure and Hirshfeld surface analysis of ethyl (3E)-5-(4-fluoro-phen-yl)3-{[(4-meth-oxy-phen-yl)formamido]-imino}-7-methyl-2H,3H,5H-[1,3]thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate 0.25-hydrate.

Shaaban K Mohamed1,2, Joel T Mague3, Mehmet Akkurt4, Abdallah M Alfayomy5, Fatma A F Ragab6, Mokhtar A Abd Ul-Malik7.   

Abstract

In the title compound, C24H23FN4O4S·0.25H2O, the di-hydro-pyrimidine ring is distinctly non-planar, with the flap C atom deviating by 0.297 (2) Å from the least-squares plane. In the crystal, zigzag chains are formed by N-H⋯N hydrogen bonds parallel to [010] and are connected into layers parallel to (100) by O-H⋯O, O-H⋯F, C-H⋯O, C-H⋯F and C-H⋯N hydrogen bonds. Additional C-H⋯O hydrogen bonds connect the layers into a three-dimensional network. A Hirshfeld surface analysis indicates that the most significant contributions to the crystal packing are from H⋯H (42.6%), O⋯H/H⋯O (16.8%) and C⋯H/H⋯C (15.5%) contacts. © Mohamed et al. 2022.

Entities:  

Keywords:  Hirshfeld surface analysis; crystal structure; hydrogen bond; pyrimidine; thia­zole

Year:  2022        PMID: 36072522      PMCID: PMC9443807          DOI: 10.1107/S2056989022006041

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Inter­est in the anti­cancer activities of di­hydro­pyrimidines (DHPMs) has been increasing since 1999, when monastrol was discovered (Mayer et al., 1999 ▸; Leizerman et al., 2004 ▸). In addition, 1,3,4-oxa­diazole has been reported to exhibit a significant anti­cancer activity (Yadagiri et al., 2015 ▸; Valente et al., 2014 ▸; El-Din et al., 2015 ▸). Since the combination of two or more pharmacophoric structural moieties can possibly augment the bioactivity, it was of inter­est to hybridize the DHPM moiety with 1,3,4-oxa­diazole, hoping to discover potent anti­cancer agents. In this context, a target compound was designed through the condensation of 6-methyl-4-aryl-1,2,3,4-tetra­hydro­pyrim­idine-2(1H)-thione derivatives and 2-(chloro­meth­yl)-5-aryl-1,3,4-oxa­diazole derivatives (Ragab et al., 2017 ▸). Unexpectedly, an intra­molecular cyclization and ring opening of 1,3,4-oxa­diazole occurred. The resulting product was chosen as an example of this series for further structural elucidation through X-ray crystallography. Herein we report the crystal structure and Hirshfeld analysis of the title compound, C24H23FN4O4S·0.25H2O.

Structural commentary

In the title compound (Fig. 1 ▸), the di­hydro­pyrimidine portion (N1/C3/C2/C1/N2/C4) of the central ring is planar to within 0.0286 (9) Å (r.m.s. deviation of the fitted atoms = 0.0211 Å), with the flap C1 atom being 0.297 (2) Å out of this plane towards the bonded 4-fluoro­phenyl group. A puckering analysis (Cremer & Pople, 1975 ▸) of this ring yielded the parameters Q = 0.2074 (15) Å, θ = 112.1 (4)° and φ = 3.5 (4)°. The dihedral angle between the C5–C10 phenyl ring and the least-squares plane of the di­hydro­pyrimidine plane is 88.76 (5)°. The C4/N2/C15/C16/S1 ring is planar to within 0.0191 (8) Å (r.m.s. deviation of the fitted atoms = 0.0140 Å) and is inclined to the N1/C3/C2/C1/N2/C4 plane by 3.99 (9)°. The dihedral angle between the C4/N2/C15/C16/S1 ring and the C18–C23 phenyl ring is 9.28 (8)°.
Figure 1

The title mol­ecule with the labelling scheme and displacement ellipsoids drawn at the 30% probability level.

Supra­molecular features

In the crystal, mol­ecules are connected into zigzag chains running parallel to [010] by N4—H4⋯N1 hydrogen bonds (Table 1 ▸). The chains are connected into (100) layers by O5—H5B⋯O3 and O5—H5A⋯F1 hydrogen bonds involving the water mol­ecule, as well as by C13—H13B⋯F1, C16—H16A⋯N1 and all of the C—H⋯O hydrogen bonds listed in Table 1 ▸, except for the C24—H24C⋯O1 hydrogen bond (Figs. 2 ▸, 3 ▸ and 4 ▸) that serves to link the layers into a three-dimensional network.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4⋯N1i 0.885 (19)2.164 (19)2.9888 (17)154.8 (16)
C1—H1⋯O5ii 0.987 (17)2.345 (18)3.307 (5)164.7 (13)
C7—H7⋯O4iii 0.97 (2)2.41 (2)3.285 (2)148.7 (17)
C13—H13B⋯F1ii 0.98 (3)2.49 (3)3.386 (2)153.0 (19)
C16—H16A⋯N1i 0.98 (2)2.58 (2)3.4019 (19)142.4 (15)
C16—H16B⋯O5iv 0.98 (2)2.37 (2)3.282 (5)154.6 (16)
C24—H24A⋯O1v 0.99 (2)2.53 (2)3.450 (3)154.6 (18)
C24—H24C⋯O1vi 0.95 (2)2.57 (2)3.504 (2)167.8 (17)
O5—H5A⋯F10.871.762.479 (5)138
O5—H5B⋯O3vii 0.872.002.863 (5)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

Figure 2

View of the mol­ecular packing along [100]. O—H⋯O, O—H⋯F, C—H⋯ O, C—H⋯N and C—H⋯F hydrogen bonds are shown as dashed lines.

Figure 3

View of the mol­ecular packing along [010]. Hydrogen bonds are depicted as in Fig. 2 ▸.

Figure 4

View of the mol­ecular packing along [001]. Hydrogen bonds are depicted as in Fig. 2 ▸.

Hirshfeld surface analysis

A Hirshfeld surface analysis was performed, and two-dimensional fingerprint plots were constructed using Crystal Explorer17.5 to qu­antify the inter­molecular inter­actions in the title mol­ecule (Turner et al., 2017 ▸). Fig. 5 ▸ depicts the Hirshfeld surface plotted over d norm in the range −0.7253 to +1.4745 arbitrary units, with red patches indicating putative hydrogen bonding in the crystal structure.
Figure 5

(a) Front and (b) back sides of the three-dimensional Hirshfeld surface of the title compound mapped over d norm, with a fixed colour scale of −0.7253 (red) to +1.4745 (blue) a.u.

The intensity of the red patches is more pronounced for N4—H4⋯N1, C1—H1⋯O5, C16—H16B⋯O5, C24—H24A⋯O1, C24—H24C⋯O1 and O5—H5B⋯O3, thus revealing the strongest inter­actions when compared to other red spots on the Hirshfeld surface. Table 2 ▸ gives numerical data for close inter­molecular contacts. The two-dimensional fingerprint plots (Fig. 6 ▸) shows that the largest contributions are from H⋯H (42.6%; Fig. 6 ▸ b), O⋯H/H⋯O (16.8%; Fig. 6 ▸ c) and C⋯H/H⋯C (15.5%; Fig. 6 ▸ d) inter­actions. Other inter­actions contributing less to the crystal packing are from F⋯H/H⋯F (6.7%), N⋯H/H⋯N (4.5%), S⋯H/H⋯S (3.4%), S⋯C/C⋯S (3.4%), C⋯C (2.8%), S⋯N/N⋯S (1.4%),N⋯C/C⋯N (1.4%), O⋯C/C⋯O (0.7%), N⋯N (0.5%), O⋯N/N⋯O (0.2%) and S⋯O/O⋯S (0.1%) inter­actions.
Table 2

Summary of short inter­atomic contacts (Å) in the title compound.

Asterisks relate to atoms of the underoccupied water mol­ecule.

ContactDistanceSymmetry operation
N1⋯H42.1651 − x, −  + y,  − z
F1⋯H13B 2.49 x,  − y, −  + z
F1⋯*H5A 1.76 x, y, z
F1⋯H14C 2.66 x, 1 + y, z
H14A⋯H24C 2.561 + x, −1 + y, z
H12C⋯O12.662 − x, 1 − y, 1 − z
H16B⋯O32.491 − x, 1 − y, 1 − z
O3⋯*H5B 2.00 x,  − y,  + z
H7⋯O42.411 − x, 2 − y, 1 − z
H16B⋯*H5B 2.051 − x, −  + y,  − z
H13A⋯H24B 2.411 + x,  − y,  + z
H14C⋯*O52.87 x, −1 + y, z
Figure 6

Two-dimensional fingerprint plots for the title compound, showing (a) all inter­actions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O and (d) C⋯H/H⋯C inter­actions. The d i and d e values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016 ▸) for compounds most closely related to the 2,3-di­hydro-5H-[1,3]thia­zolo[3,2-a]pyrimidine unit of the title compound gave the following hits: refcodes ZOWXAM (I) (Krishnamurthy et al., 2014 ▸); PONVOF (II) (Krishnamurthy & Begum, 2014 ▸); AFIZUM (III) (Fathima et al., 2013 ▸); YAYHAJ (IV) (Nagarajaiah et al., 2012 ▸); KUSQUL (V) (Jotani et al., 2010a ▸); PUJRIW (VI) (Jotani et al., 2010b ▸); DIWSIM (VII) (Jotani & Baldaniya, 2008 ▸); TICHAP (VIII) (Jotani & Baldaniya, 2007 ▸); AWUPAK (IX) (Fun et al., 2011 ▸); XETKOX (X) (Sridhar et al., 2006 ▸) and XETKOX01 (XI) (Sridhar et al., 2006 ▸). In the crystal of (I), pairs of weak C—H⋯O hydrogen bonds link mol­ecules related by twofold rotation axes, forming (10) rings, which in turn are linked by weak C—H⋯N inter­actions to form chains parallel to [010]. In addition, weak C—H⋯π(arene) inter­actions link the chains into layers parallel to (001), and π–π inter­actions connect these layers into a three-dimensional network. In (II), weak C—H⋯F and C— H⋯O hydrogen bonds connect mol­ecules, forming zigzag chains parallel to [010]. In addition, π–π stacking inter­actions connect these chains into ladders via inversion-related 4-fluoro­phenyl groups. In (III), pairs of weak C—H⋯O hydrogen bonds lead to the formation of inversion dimers. A weak C—H⋯π inter­action and π–π stacking inter­actions are observed. In (IV), O—H⋯N and C— H⋯S inter­actions result in (001) layers. The supra­molecular assembly is stabilized by π–π stacking inter­actions between the 2-bromo­benzyl­idene and thia­zolo­pyrimidine rings. In addition, C—H⋯π inter­actions are also observed. In (V), co-operative C—H⋯O and C—H⋯π inter­actions lead to supra­molecular chains parallel [100]. These chains are connected via π–π inter­actions. The crystal packing of (VI) is influenced by weak inter­molecular C—H⋯π inter­actions and π–π stacking between the thia­zole and phenyl rings, which stack the mol­ecules parallel to [001]. In (VII), in addition to inter­molecular C— H⋯O hydrogen bonding, short intra­molecular C—H⋯S contacts and π–π stacking inter­actions contribute to the crystal packing. In (VIII), short inter­molecular C—H⋯O, C—H⋯π and π–π stacking inter­actions contribute to the stability of the crystal packing. In (IX), mol­ecules are linked into a three-dimensional network by inter­molecular C— H⋯O and C—H⋯F hydrogen bonds. The crystal structure is further stabilized by a C—H⋯π inter­action. Compounds (X) and (XI) crystallize in two polymorphic forms having the same space-group type, viz. P1, with Z′ = 2 and Z′ = 1. In both polymorphs, the mol­ecules are linked by N—H⋯O and C—H⋯O hydrogen bonds.

Synthesis and crystallization

A mixture of ethyl 4-(4-fluoro­phen­yl)-6-methyl-2-thioxo-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate (2 mmol), 2-(chlor­o­meth­yl)-5-(4-meth­oxy­phen­yl)-1,3,4-oxa­diazole (2 mmol), potassium iodide (2 mmol) and triethyl amine (2.5 mmol), was refluxed for 4 h in absolute ethanol (20 ml). The reaction mixture was poured onto crushed ice (40 g) and acidified with acetic acid (2 ml). The deposited precipitate was filtered off, washed with cold water, dried and recrystallized from a methanol/DMF mixture. Yield: 95%; melting point: 493–495 K; IR (KBr) νmax/cm−1 3390, 3178, 1693, 1654. 1H NMR (400 MHz, DMSO-d 6) δ 10.60 (s, 1H, NH), 7.81 (d, J = 8.7 Hz, 2H, Ar—H), 7.44 (t, J = 7.7 Hz, 2H, Ar—H), 7.15 (t, J = 7.7 Hz, 2H, Ar—H), 7.03 (d, J = 8.7 Hz, 2H, Ar—H), 6.13 (s, 1H, C4—H), 4.45 (d, J = 17.4 Hz, 1H, S—CH2), 4.35 (d, J = 17.3 Hz, 1H, S—CH2), 4.03 (q, J = 7.1 Hz, 2H, CH2—CH3), 3.82 (s, 3H, OCH3), 2.34 (s, 3H, C6-CH3), 1.11 (t, J = 7.1 Hz, 3H, CH2—CH3). 13C NMR (125 MHz, DMSO-d 6) δ 165.59, 163.23, 163.20, 162.65, 153.92, 153.58, 130.57, 130.50, 130.03, 125.90, 115.64, 115.47, 114.05, 105.95, 60.28, 55.87, 54.89, 28.56, 23.06, 14.45. Analysis calculated for C24H23FN4O4S (482.53): C 59.74, H 4.80, N 11.61. Found: C 60.02, H 4.89, N 11.87.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The H atoms were found in difference-Fourier maps; all C and N-bound H atoms were refined freely. The water mol­ecule was found to be occupationally disordered and was refined with a fixed site occupation factor of 1/4. The H atoms of the water mol­ecules were located in a difference-Fourier map, their bond lengths set to an ideal value of 0.87 Å, and were refined with U iso(H) = 1.5 U eq(O) using a riding model.
Table 3

Experimental details

Crystal data
Chemical formulaC24H23FN4O4S·0.25H2O
M r 487.03
Crystal system, space groupMonoclinic, P21/c
Temperature (K)150
a, b, c (Å)14.4316 (3), 10.8518 (2), 15.5940 (3)
β (°)109.941 (1)
V3)2295.74 (8)
Z 4
Radiation typeCu Kα
μ (mm−1)1.68
Crystal size (mm)0.15 × 0.14 × 0.11
 
Data collection
DiffractometerBruker D8 VENTURE PHOTON 100 CMOS
Absorption correctionMulti-scan (SADABS; Krause et al., 2015)
T min, T max 0.75, 0.84
No. of measured, independent and observed [I > 2σ(I)] reflections17597, 4576, 4142
R int 0.029
(sin θ/λ)max−1)0.625
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.035, 0.088, 1.04
No. of reflections4576
No. of parameters409
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.34, −0.56

Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), DIAMOND (Brandenburg & Putz, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989022006041/wm5648sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022006041/wm5648Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022006041/wm5648Isup3.cml CCDC reference: 2177565 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H23FN4O4S·0.25H2OF(000) = 1018
Mr = 487.03Dx = 1.409 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 14.4316 (3) ÅCell parameters from 9970 reflections
b = 10.8518 (2) Åθ = 3.3–74.4°
c = 15.5940 (3) ŵ = 1.68 mm1
β = 109.941 (1)°T = 150 K
V = 2295.74 (8) Å3Block, colourless
Z = 40.15 × 0.14 × 0.11 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer4576 independent reflections
Radiation source: INCOATEC IµS micro–focus source4142 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.4167 pixels mm-1θmax = 74.4°, θmin = 3.3°
ω scansh = −17→18
Absorption correction: multi-scan (SADABS; Krause et al., 2015)k = −13→12
Tmin = 0.75, Tmax = 0.84l = −19→18
17597 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0389P)2 + 1.1637P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4576 reflectionsΔρmax = 0.34 e Å3
409 parametersΔρmin = −0.56 e Å3
0 restraintsExtinction correction: SHELXL-2018/1 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00229 (19)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Refinement of the site occupancy factor for the lattice water (O5) converged at ca. 0.25. This was fixed at this value for the remainder of the refinement, the attached hydrogen atoms were located in a difference map and included as riding contributions in idealized positions.
xyzUiso*/UeqOcc. (<1)
S10.45709 (2)0.29846 (3)0.22568 (2)0.02637 (11)
F10.81951 (11)0.85095 (10)0.24433 (11)0.0709 (4)
O10.93592 (8)0.24379 (11)0.47803 (8)0.0365 (3)
O20.88439 (7)0.41670 (10)0.52684 (7)0.0294 (2)
O30.55706 (8)0.71812 (10)0.54550 (7)0.0307 (2)
O40.17420 (9)1.04606 (11)0.46165 (8)0.0390 (3)
N10.64445 (8)0.22708 (11)0.27415 (8)0.0220 (2)
N20.60560 (8)0.39869 (10)0.34918 (8)0.0200 (2)
N30.54560 (8)0.55654 (10)0.41266 (8)0.0206 (2)
N40.46512 (8)0.62737 (11)0.41154 (8)0.0209 (2)
H40.4182 (14)0.6419 (17)0.3587 (13)0.032 (5)*
C10.70873 (9)0.43284 (13)0.40035 (10)0.0213 (3)
H10.7122 (12)0.4512 (15)0.4634 (11)0.022 (4)*
C20.77324 (10)0.32264 (13)0.39918 (10)0.0224 (3)
C30.74171 (10)0.23233 (13)0.33574 (10)0.0224 (3)
C40.58287 (10)0.30597 (12)0.28731 (9)0.0207 (3)
C50.73684 (9)0.54708 (13)0.35807 (10)0.0233 (3)
C60.76870 (10)0.65331 (14)0.40974 (11)0.0291 (3)
H60.7696 (14)0.6545 (17)0.4744 (13)0.035 (5)*
C70.79756 (12)0.75620 (15)0.37183 (14)0.0365 (4)
H70.8223 (15)0.829 (2)0.4092 (14)0.048 (6)*
C80.79149 (13)0.75033 (15)0.28209 (14)0.0410 (4)
C90.75793 (15)0.64862 (16)0.22793 (14)0.0420 (4)
H90.7526 (16)0.651 (2)0.1629 (15)0.050 (6)*
C100.73134 (12)0.54590 (14)0.26730 (11)0.0314 (3)
H100.7067 (14)0.4745 (19)0.2304 (13)0.038 (5)*
C110.87186 (10)0.32007 (13)0.46924 (10)0.0253 (3)
C120.97996 (11)0.42561 (17)0.59855 (11)0.0331 (3)
H12A0.9878 (15)0.353 (2)0.6404 (14)0.045 (5)*
H12B1.0316 (14)0.4216 (17)0.5703 (12)0.034 (5)*
H12C0.9642 (16)0.618 (2)0.6014 (15)0.052 (6)*
C130.98133 (13)0.5454 (2)0.64668 (13)0.0412 (4)
H13A1.0491 (17)0.557 (2)0.6929 (15)0.055 (6)*
H13B0.9329 (18)0.545 (2)0.6776 (16)0.060 (7)*
C140.80354 (11)0.12659 (15)0.32406 (12)0.0287 (3)
H14A0.8649 (17)0.155 (2)0.3186 (15)0.052 (6)*
H14B0.8240 (16)0.074 (2)0.3764 (16)0.054 (6)*
H14C0.7663 (16)0.079 (2)0.2696 (15)0.046 (5)*
C150.52713 (9)0.47098 (12)0.35314 (9)0.0202 (3)
C160.43099 (10)0.43208 (14)0.28344 (10)0.0260 (3)
H16A0.4032 (14)0.4974 (19)0.2389 (13)0.040 (5)*
H16B0.3839 (15)0.4099 (18)0.3141 (14)0.043 (5)*
C170.48023 (10)0.71162 (13)0.48039 (9)0.0223 (3)
C180.39469 (10)0.79431 (13)0.47152 (9)0.0230 (3)
C190.41359 (12)0.90278 (14)0.52329 (10)0.0289 (3)
H190.4793 (15)0.9188 (17)0.5629 (13)0.036 (5)*
C200.33869 (12)0.98472 (15)0.51747 (11)0.0331 (3)
H200.3508 (16)1.062 (2)0.5510 (15)0.053 (6)*
C210.24267 (11)0.95909 (15)0.46124 (10)0.0294 (3)
C220.22193 (11)0.85134 (15)0.40997 (10)0.0287 (3)
H220.1533 (15)0.8314 (18)0.3709 (13)0.037 (5)*
C230.29829 (11)0.76979 (14)0.41584 (10)0.0260 (3)
H230.2829 (13)0.6946 (17)0.3814 (12)0.031 (5)*
C240.07367 (14)1.0253 (2)0.40748 (14)0.0456 (5)
H24A0.0502 (16)0.946 (2)0.4247 (15)0.054 (6)*
H24B0.0650 (16)1.025 (2)0.3411 (16)0.053 (6)*
H24C0.0390 (16)1.093 (2)0.4203 (14)0.048 (6)*
O50.7191 (3)0.9508 (5)0.0994 (3)0.0378 (10)0.25
H5A0.7662590.9017040.1306260.057*0.25
H5B0.6679960.9027640.0790720.057*0.25
U11U22U33U12U13U23
S10.01757 (17)0.0260 (2)0.0312 (2)0.00125 (12)0.00266 (13)−0.00720 (13)
F10.1061 (11)0.0263 (6)0.1191 (11)−0.0171 (6)0.0888 (10)−0.0055 (6)
O10.0214 (5)0.0345 (6)0.0476 (7)0.0093 (4)0.0038 (5)−0.0055 (5)
O20.0177 (5)0.0313 (6)0.0326 (6)0.0026 (4)0.0002 (4)−0.0057 (4)
O30.0271 (5)0.0336 (6)0.0274 (5)0.0038 (4)0.0040 (4)−0.0039 (4)
O40.0370 (6)0.0405 (7)0.0400 (6)0.0175 (5)0.0137 (5)−0.0051 (5)
N10.0198 (5)0.0194 (6)0.0257 (6)0.0010 (4)0.0064 (5)−0.0013 (4)
N20.0151 (5)0.0186 (6)0.0246 (6)0.0011 (4)0.0046 (4)−0.0013 (4)
N30.0174 (5)0.0202 (6)0.0246 (6)0.0028 (4)0.0078 (4)0.0011 (4)
N40.0179 (5)0.0216 (6)0.0231 (6)0.0044 (4)0.0069 (5)0.0005 (4)
C10.0151 (6)0.0211 (7)0.0256 (7)0.0001 (5)0.0042 (5)−0.0028 (5)
C20.0169 (6)0.0208 (7)0.0284 (7)0.0019 (5)0.0062 (5)0.0005 (5)
C30.0190 (6)0.0205 (7)0.0276 (7)0.0016 (5)0.0079 (5)0.0023 (5)
C40.0206 (6)0.0181 (7)0.0230 (7)−0.0001 (5)0.0067 (5)0.0005 (5)
C50.0146 (6)0.0199 (7)0.0348 (8)0.0012 (5)0.0077 (5)−0.0021 (5)
C60.0207 (7)0.0237 (8)0.0399 (9)0.0007 (5)0.0066 (6)−0.0057 (6)
C70.0270 (8)0.0204 (8)0.0640 (11)−0.0040 (6)0.0179 (8)−0.0093 (7)
C80.0439 (9)0.0204 (8)0.0744 (13)−0.0032 (7)0.0406 (9)0.0001 (8)
C90.0582 (11)0.0270 (9)0.0568 (11)−0.0018 (7)0.0402 (10)−0.0014 (7)
C100.0373 (8)0.0227 (8)0.0403 (9)−0.0035 (6)0.0212 (7)−0.0051 (6)
C110.0191 (6)0.0238 (7)0.0312 (7)0.0015 (5)0.0064 (6)−0.0005 (6)
C120.0177 (7)0.0431 (10)0.0315 (8)0.0004 (6)−0.0005 (6)−0.0031 (7)
C130.0284 (8)0.0560 (12)0.0348 (9)−0.0025 (8)0.0053 (7)−0.0140 (8)
C140.0239 (7)0.0252 (8)0.0356 (8)0.0050 (6)0.0083 (6)−0.0037 (6)
C150.0171 (6)0.0186 (7)0.0246 (7)0.0011 (5)0.0068 (5)0.0028 (5)
C160.0187 (6)0.0254 (8)0.0303 (8)0.0020 (5)0.0038 (6)−0.0048 (6)
C170.0226 (7)0.0217 (7)0.0234 (7)0.0007 (5)0.0090 (5)0.0015 (5)
C180.0246 (7)0.0235 (7)0.0234 (7)0.0023 (5)0.0113 (6)0.0002 (5)
C190.0287 (8)0.0288 (8)0.0292 (8)0.0003 (6)0.0098 (6)−0.0039 (6)
C200.0378 (9)0.0286 (8)0.0336 (8)0.0043 (6)0.0134 (7)−0.0072 (6)
C210.0322 (8)0.0313 (8)0.0286 (8)0.0110 (6)0.0155 (6)0.0018 (6)
C220.0254 (7)0.0341 (8)0.0283 (7)0.0042 (6)0.0114 (6)−0.0016 (6)
C230.0256 (7)0.0274 (8)0.0273 (7)0.0014 (6)0.0121 (6)−0.0035 (6)
C240.0357 (9)0.0540 (12)0.0455 (11)0.0212 (9)0.0119 (8)−0.0026 (9)
O50.027 (2)0.042 (3)0.039 (3)−0.0069 (19)0.0036 (19)0.006 (2)
S1—C41.7422 (14)C9—C101.388 (2)
S1—C161.8130 (15)C9—H90.99 (2)
F1—C81.3657 (19)C10—H100.96 (2)
O1—C111.2133 (18)C12—C131.498 (2)
O2—C111.3522 (18)C12—H12A1.00 (2)
O2—C121.4526 (17)C12—H12B0.988 (19)
O3—C171.2236 (17)C13—H12C1.03 (2)
O4—C211.3680 (18)C13—H13A1.00 (2)
O4—C241.426 (2)C13—H13B0.98 (3)
N1—C41.2996 (18)C14—H14A0.97 (2)
N1—C31.4058 (17)C14—H14B0.96 (2)
N2—C41.3546 (17)C14—H14C0.98 (2)
N2—C151.3963 (17)C15—C161.5020 (19)
N2—C11.4762 (16)C16—H16A0.98 (2)
N3—C151.2750 (18)C16—H16B0.98 (2)
N3—N41.3880 (15)C17—C181.4939 (19)
N4—C171.3698 (18)C18—C231.391 (2)
N4—H40.885 (19)C18—C191.401 (2)
C1—C21.5194 (18)C19—C201.379 (2)
C1—C51.5226 (19)C19—H190.96 (2)
C1—H10.987 (17)C20—C211.392 (2)
C2—C31.356 (2)C20—H200.97 (2)
C2—C111.4694 (19)C21—C221.390 (2)
C3—C141.5024 (19)C22—C231.392 (2)
C5—C101.391 (2)C22—H220.99 (2)
C5—C61.392 (2)C23—H230.960 (19)
C6—C71.392 (2)C24—H24A0.99 (2)
C6—H61.004 (19)C24—H24B1.00 (2)
C7—C81.373 (3)C24—H24C0.95 (2)
C7—H70.97 (2)O5—H5A0.8700
C8—C91.374 (3)O5—H5B0.8701
C4—S1—C1692.44 (6)C13—C12—H12B112.3 (11)
C11—O2—C12116.09 (11)H12A—C12—H12B108.7 (16)
C21—O4—C24118.60 (14)C12—C13—H12C111.3 (12)
C4—N1—C3116.27 (12)C12—C13—H13A107.9 (13)
C4—N2—C15116.48 (11)H12C—C13—H13A110.2 (18)
C4—N2—C1121.74 (11)C12—C13—H13B110.9 (14)
C15—N2—C1121.23 (11)H12C—C13—H13B107.1 (18)
C15—N3—N4115.33 (11)H13A—C13—H13B109.4 (19)
C17—N4—N3116.80 (11)C3—C14—H14A111.4 (13)
C17—N4—H4118.6 (12)C3—C14—H14B112.1 (14)
N3—N4—H4118.8 (12)H14A—C14—H14B103.9 (18)
N2—C1—C2107.75 (11)C3—C14—H14C109.4 (12)
N2—C1—C5109.80 (11)H14A—C14—H14C109.8 (18)
C2—C1—C5112.38 (11)H14B—C14—H14C110.1 (18)
N2—C1—H1106.8 (9)N3—C15—N2118.03 (12)
C2—C1—H1110.3 (9)N3—C15—C16130.06 (12)
C5—C1—H1109.6 (10)N2—C15—C16111.90 (11)
C3—C2—C11121.84 (12)C15—C16—S1106.69 (9)
C3—C2—C1121.53 (12)C15—C16—H16A111.4 (12)
C11—C2—C1116.62 (12)S1—C16—H16A109.4 (11)
C2—C3—N1122.42 (12)C15—C16—H16B109.7 (12)
C2—C3—C14125.10 (13)S1—C16—H16B109.9 (12)
N1—C3—C14112.47 (12)H16A—C16—H16B109.8 (16)
N1—C4—N2126.10 (12)O3—C17—N4123.09 (13)
N1—C4—S1121.47 (10)O3—C17—C18121.90 (13)
N2—C4—S1112.41 (10)N4—C17—C18115.00 (12)
C10—C5—C6119.33 (14)C23—C18—C19118.49 (13)
C10—C5—C1120.14 (13)C23—C18—C17124.17 (13)
C6—C5—C1120.53 (13)C19—C18—C17117.34 (13)
C5—C6—C7120.41 (16)C20—C19—C18120.67 (15)
C5—C6—H6118.7 (11)C20—C19—H19120.6 (11)
C7—C6—H6120.9 (11)C18—C19—H19118.8 (11)
C8—C7—C6118.11 (15)C19—C20—C21120.16 (15)
C8—C7—H7122.1 (12)C19—C20—H20121.9 (13)
C6—C7—H7119.8 (12)C21—C20—H20117.9 (13)
F1—C8—C7118.48 (16)O4—C21—C22124.66 (14)
F1—C8—C9118.13 (17)O4—C21—C20115.13 (14)
C7—C8—C9123.39 (16)C22—C21—C20120.20 (14)
C8—C9—C10117.76 (17)C21—C22—C23119.12 (14)
C8—C9—H9119.7 (13)C21—C22—H22120.7 (11)
C10—C9—H9122.5 (13)C23—C22—H22120.2 (11)
C9—C10—C5120.96 (15)C18—C23—C22121.34 (14)
C9—C10—H10119.1 (12)C18—C23—H23120.2 (11)
C5—C10—H10119.9 (12)C22—C23—H23118.4 (11)
O1—C11—O2122.00 (13)O4—C24—H24A110.4 (13)
O1—C11—C2127.18 (14)O4—C24—H24B110.9 (13)
O2—C11—C2110.81 (11)H24A—C24—H24B110.1 (18)
O2—C12—C13106.88 (13)O4—C24—H24C104.9 (13)
O2—C12—H12A108.3 (12)H24A—C24—H24C111.1 (18)
C13—C12—H12A112.1 (12)H24B—C24—H24C109.4 (18)
O2—C12—H12B108.5 (11)H5A—O5—H5B104.0
C15—N3—N4—C17173.45 (12)C1—C5—C10—C9−179.13 (15)
C4—N2—C1—C2−21.62 (17)C12—O2—C11—O11.5 (2)
C15—N2—C1—C2167.22 (11)C12—O2—C11—C2−179.00 (12)
C4—N2—C1—C5101.08 (14)C3—C2—C11—O12.3 (2)
C15—N2—C1—C5−70.08 (15)C1—C2—C11—O1−176.78 (15)
N2—C1—C2—C320.41 (18)C3—C2—C11—O2−177.21 (13)
C5—C1—C2—C3−100.69 (15)C1—C2—C11—O23.75 (18)
N2—C1—C2—C11−160.54 (12)C11—O2—C12—C13173.66 (14)
C5—C1—C2—C1178.36 (15)N4—N3—C15—N2178.26 (11)
C11—C2—C3—N1173.50 (13)N4—N3—C15—C16−2.1 (2)
C1—C2—C3—N1−7.5 (2)C4—N2—C15—N3177.79 (12)
C11—C2—C3—C14−5.0 (2)C1—N2—C15—N3−10.60 (19)
C1—C2—C3—C14174.03 (14)C4—N2—C15—C16−1.93 (17)
C4—N1—C3—C2−7.2 (2)C1—N2—C15—C16169.67 (12)
C4—N1—C3—C14171.48 (13)N3—C15—C16—S1−176.70 (12)
C3—N1—C4—N26.2 (2)N2—C15—C16—S12.98 (14)
C3—N1—C4—S1−171.99 (10)C4—S1—C16—C15−2.61 (11)
C15—N2—C4—N1−178.53 (13)N3—N4—C17—O3−7.08 (19)
C1—N2—C4—N19.9 (2)N3—N4—C17—C18174.20 (11)
C15—N2—C4—S1−0.18 (15)O3—C17—C18—C23−160.50 (14)
C1—N2—C4—S1−171.74 (10)N4—C17—C18—C2318.2 (2)
C16—S1—C4—N1−179.84 (12)O3—C17—C18—C1919.1 (2)
C16—S1—C4—N21.73 (11)N4—C17—C18—C19−162.14 (13)
N2—C1—C5—C10−58.95 (16)C23—C18—C19—C20−1.5 (2)
C2—C1—C5—C1060.97 (17)C17—C18—C19—C20178.83 (14)
N2—C1—C5—C6121.37 (13)C18—C19—C20—C211.3 (2)
C2—C1—C5—C6−118.72 (14)C24—O4—C21—C221.3 (2)
C10—C5—C6—C7−1.9 (2)C24—O4—C21—C20−178.54 (16)
C1—C5—C6—C7177.79 (13)C19—C20—C21—O4179.23 (14)
C5—C6—C7—C81.4 (2)C19—C20—C21—C22−0.6 (2)
C6—C7—C8—F1179.90 (15)O4—C21—C22—C23−179.73 (14)
C6—C7—C8—C90.4 (3)C20—C21—C22—C230.1 (2)
F1—C8—C9—C10178.81 (16)C19—C18—C23—C221.0 (2)
C7—C8—C9—C10−1.7 (3)C17—C18—C23—C22−179.37 (13)
C8—C9—C10—C51.2 (3)C21—C22—C23—C18−0.3 (2)
C6—C5—C10—C90.6 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4···N1i0.885 (19)2.164 (19)2.9888 (17)154.8 (16)
C1—H1···O5ii0.987 (17)2.345 (18)3.307 (5)164.7 (13)
C7—H7···O4iii0.97 (2)2.41 (2)3.285 (2)148.7 (17)
C13—H13B···F1ii0.98 (3)2.49 (3)3.386 (2)153.0 (19)
C16—H16A···N1i0.98 (2)2.58 (2)3.4019 (19)142.4 (15)
C16—H16B···O5iv0.98 (2)2.37 (2)3.282 (5)154.6 (16)
C24—H24A···O1v0.99 (2)2.53 (2)3.450 (3)154.6 (18)
C24—H24C···O1vi0.95 (2)2.57 (2)3.504 (2)167.8 (17)
O5—H5A···F10.871.762.479 (5)138
O5—H5B···O3vii0.872.002.863 (5)174
  19 in total

1.  Differential effects of monastrol in two human cell lines.

Authors:  I Leizerman; R Avunie-Masala; M Elkabets; A Fich; L Gheber
Journal:  Cell Mol Life Sci       Date:  2004-08       Impact factor: 9.261

2.  Ethyl (2Z)-2-(3-methoxy-benzyl-idene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Mukesh M Jotani; Bharat B Baldaniya; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

3.  Ethyl 2-(2-acetoxy-benzyl-idene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Mukesh M Jotani; Bharat B Baldaniya; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

4.  1,3,4-Oxadiazole-containing histone deacetylase inhibitors: anticancer activities in cancer cells.

Authors:  Sergio Valente; Daniela Trisciuoglio; Teresa De Luca; Angela Nebbioso; Donatella Labella; Alessia Lenoci; Chiara Bigogno; Giulio Dondio; Marco Miceli; Gerald Brosch; Donatella Del Bufalo; Lucia Altucci; Antonello Mai
Journal:  J Med Chem       Date:  2014-07-08       Impact factor: 7.446

5.  Methyl (2Z)-2-(2-fluoro-4-meth-oxy-benzyl-idene)-5-(4-meth-oxy-phen-yl)-7-methyl-3-oxo-2,3-dihydro-5H-[1,3]thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Hoong-Kun Fun; Wan-Sin Loh; B K Sarojini; K Umesha; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06

6.  Methyl 2-(2-bromo-benzyl-idene)-5-(4-hy-droxy-phen-yl)-7-methyl-3-oxo-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  H Nagarajaiah; Nikhath Fathima; Noor Shahina Begum
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

7.  Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination.

Authors:  Lennard Krause; Regine Herbst-Irmer; George M Sheldrick; Dietmar Stalke
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Methyl 5-(4-acet-oxy-phen-yl)-2-(2-bromo-benzyl-idine)-7-methyl-3-oxo-2,3-di-hydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Nikhath Fathima; H Nagarajaiah; Noor Shahina Begum
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13

10.  Crystal structure of ethyl 5-(3-fluoro-phen-yl)-2-[(4-fluoro-phen-yl)methyl-idene]-7-methyl-3-oxo-2H,3H,5H-[1,3]thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  M S Krishnamurthy; H Nagarajaiah; Noor Shahina Begum
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-24
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