Literature DB >> 21580607

Ethyl 2-(2-acetoxy-benzyl-idene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Mukesh M Jotani, Bharat B Baldaniya, Edward R T Tiekink.   

Abstract

In the title mol-ecule, C(25)H(22)N(2)O(5)S, the atoms of the thia-zolopyrimidine ring system, with the exception of the phenyl-bearing C atom [deviation = 0.177 (2) Å], are essentially planar [r.m.s deviation = 0.100 (2) °] and the mean plane of these atoms forms dihedral angles of 89.86 (10) and 7.97 (8)° with the phenyl and benzene rings, respectively. In the crystal, co-operative C-H⋯O and C-H⋯π inter-actions lead to a supra-molecular chain along the a axis. These chains are connected via π-π inter-actions [centroid-centroid = 3.7523 (13) Å].

Entities:  

Year:  2010        PMID: 21580607      PMCID: PMC2983806          DOI: 10.1107/S1600536810007853

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological activity of thia­zolo[3,2-a]pyrimidine derivatives, see: Winter et al. (1962 ▶); Atwal et al. (1990 ▶); Kappe (2000 ▶); Adams et al. (2005 ▶). For related structures, see: Jotani & Baldaniya (2007 ▶, 2008 ▶); Baldaniya & Jotani (2008 ▶); Jotani et al. (2009 ▶). For additional geometric analysis, see: Cremer & Pople (1975 ▶). Semi-empirical Quantum Chemical Calculations were performed with the n class="Chemical">MOPAC2009 program (Stewart, 2009 ▶).

Experimental

Crystal data

C25H22N2O5S M = 462.51 Triclinic, a = 8.4236 (3) Å b = 9.6807 (3) Å c = 14.3345 (5) Å α = 87.939 (2)° β = 89.680 (2)° γ = 75.287 (2)° V = 1129.86 (7) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.47 × 0.35 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.920, T max = 0.965 20701 measured reflections 3969 independent reflections 3438 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.137 S = 1.06 3969 reflections 301 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810007853/lh5004sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007853/lh5004Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H22N2O5SZ = 2
Mr = 462.51F(000) = 484
Triclinic, P1Dx = 1.359 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4236 (3) ÅCell parameters from 5176 reflections
b = 9.6807 (3) Åθ = 2.2–31.3°
c = 14.3345 (5) ŵ = 0.18 mm1
α = 87.939 (2)°T = 293 K
β = 89.680 (2)°Block, yellow
γ = 75.287 (2)°0.47 × 0.35 × 0.20 mm
V = 1129.86 (7) Å3
Bruker SMART APEX CCD diffractometer3969 independent reflections
Radiation source: fine-focus sealed tube3438 reflections with I > 2σ(I)
graphiteRint = 0.024
ω and φ scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.920, Tmax = 0.965k = −11→11
20701 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0721P)2 + 0.4966P] where P = (Fo2 + 2Fc2)/3
3969 reflections(Δ/σ)max = 0.002
301 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.19582 (7)0.35035 (6)0.10853 (4)0.0550 (2)
O10.8697 (2)0.4977 (2)0.28339 (16)0.0886 (6)
O20.87965 (18)0.27940 (18)0.33559 (11)0.0604 (4)
O30.44199 (18)0.03161 (15)0.25695 (11)0.0563 (4)
O4−0.00662 (19)−0.14186 (16)0.17321 (11)0.0590 (4)
O5−0.1285 (3)−0.0711 (3)0.30616 (14)0.1097 (9)
N10.4187 (2)0.4897 (2)0.14656 (13)0.0568 (5)
N20.45080 (18)0.25926 (16)0.21508 (10)0.0387 (4)
C10.3732 (2)0.3754 (2)0.16117 (13)0.0447 (5)
C20.5865 (2)0.2654 (2)0.27852 (12)0.0383 (4)
H20.67430.17750.27360.046*
C30.6520 (2)0.3922 (2)0.24663 (13)0.0433 (4)
C40.5692 (3)0.4949 (2)0.18730 (15)0.0524 (5)
C50.5251 (2)0.2766 (2)0.37843 (12)0.0377 (4)
C60.4075 (3)0.3956 (2)0.40504 (15)0.0496 (5)
H60.36750.47000.36180.060*
C70.3486 (3)0.4053 (3)0.49501 (17)0.0640 (6)
H70.26890.48580.51210.077*
C80.4071 (3)0.2968 (3)0.55903 (16)0.0664 (7)
H80.36660.30290.61960.080*
C90.5252 (4)0.1794 (3)0.53393 (16)0.0690 (7)
H90.56630.10620.57790.083*
C100.5843 (3)0.1683 (2)0.44344 (15)0.0552 (5)
H100.66400.08750.42670.066*
C110.8095 (3)0.3985 (2)0.28807 (14)0.0492 (5)
C121.0308 (3)0.2780 (3)0.38364 (18)0.0651 (6)
H12A1.11190.29440.33920.078*
H12B1.01130.35330.42840.078*
C131.0905 (4)0.1404 (4)0.4313 (3)0.1057 (12)
H13A1.01390.12850.47890.158*
H13B1.19520.13520.45930.158*
H13C1.10190.06610.38720.158*
C140.6204 (4)0.6257 (3)0.1538 (2)0.0819 (9)
H14A0.72780.62180.17770.123*
H14B0.54360.70940.17550.123*
H14C0.62270.62960.08680.123*
C150.3839 (2)0.1429 (2)0.21508 (13)0.0409 (4)
C160.2306 (2)0.1780 (2)0.15845 (12)0.0417 (4)
C170.1391 (2)0.0840 (2)0.15492 (13)0.0445 (4)
H170.1848−0.00360.18520.053*
C18−0.0194 (2)0.0952 (2)0.11188 (13)0.0437 (4)
C19−0.0947 (2)−0.0168 (2)0.12602 (14)0.0463 (5)
C20−0.2463 (3)−0.0123 (3)0.08936 (16)0.0563 (5)
H20−0.2943−0.08770.10090.068*
C21−0.3265 (3)0.1051 (3)0.03518 (16)0.0563 (6)
H21−0.42900.10890.00990.068*
C22−0.2554 (3)0.2161 (3)0.01856 (15)0.0555 (5)
H22−0.30920.2948−0.01840.067*
C23−0.1045 (3)0.2112 (2)0.05660 (15)0.0516 (5)
H23−0.05800.28760.04500.062*
C24−0.0289 (3)−0.1560 (3)0.26542 (18)0.0612 (6)
C250.0891 (4)−0.2840 (3)0.3062 (2)0.0810 (8)
H25A0.1858−0.25820.32650.122*
H25B0.1185−0.35530.25990.122*
H25C0.0396−0.32140.35850.122*
U11U22U33U12U13U23
S10.0523 (3)0.0583 (4)0.0560 (3)−0.0191 (3)−0.0217 (2)0.0164 (3)
O10.0699 (12)0.0833 (13)0.1248 (17)−0.0447 (11)−0.0285 (11)0.0212 (12)
O20.0430 (8)0.0730 (11)0.0683 (10)−0.0222 (7)−0.0161 (7)0.0111 (8)
O30.0549 (9)0.0473 (8)0.0666 (10)−0.0140 (7)−0.0186 (7)0.0120 (7)
O40.0563 (9)0.0499 (9)0.0684 (10)−0.0095 (7)−0.0008 (7)−0.0001 (7)
O50.1234 (19)0.1067 (17)0.0643 (12)0.0321 (15)0.0107 (12)0.0131 (11)
N10.0579 (11)0.0560 (11)0.0592 (11)−0.0222 (9)−0.0177 (9)0.0186 (9)
N20.0374 (8)0.0434 (9)0.0353 (8)−0.0103 (7)−0.0055 (6)0.0019 (6)
C10.0444 (11)0.0503 (11)0.0394 (10)−0.0129 (9)−0.0074 (8)0.0067 (8)
C20.0333 (9)0.0426 (10)0.0384 (9)−0.0083 (7)−0.0053 (7)0.0013 (8)
C30.0408 (10)0.0516 (11)0.0400 (10)−0.0163 (9)0.0025 (8)−0.0018 (8)
C40.0555 (12)0.0577 (13)0.0483 (11)−0.0237 (10)−0.0045 (9)0.0095 (9)
C50.0342 (9)0.0437 (10)0.0373 (9)−0.0139 (8)−0.0059 (7)0.0011 (8)
C60.0470 (11)0.0524 (12)0.0470 (11)−0.0083 (9)−0.0027 (9)−0.0003 (9)
C70.0581 (14)0.0772 (16)0.0566 (14)−0.0151 (12)0.0098 (11)−0.0174 (12)
C80.0754 (16)0.0904 (19)0.0425 (12)−0.0371 (15)0.0078 (11)−0.0091 (12)
C90.0877 (18)0.0779 (17)0.0437 (12)−0.0279 (15)−0.0091 (12)0.0177 (11)
C100.0588 (13)0.0547 (13)0.0485 (12)−0.0088 (10)−0.0059 (10)0.0078 (10)
C110.0420 (11)0.0611 (13)0.0471 (11)−0.0179 (10)0.0036 (9)−0.0022 (10)
C120.0417 (12)0.0902 (18)0.0647 (15)−0.0188 (12)−0.0125 (10)−0.0020 (13)
C130.088 (2)0.102 (2)0.128 (3)−0.0310 (19)−0.055 (2)0.030 (2)
C140.092 (2)0.0854 (19)0.0819 (18)−0.0525 (17)−0.0265 (15)0.0380 (15)
C150.0426 (10)0.0446 (11)0.0357 (9)−0.0116 (8)−0.0018 (8)−0.0004 (8)
C160.0420 (10)0.0487 (11)0.0336 (9)−0.0100 (8)−0.0038 (7)−0.0010 (8)
C170.0452 (11)0.0487 (11)0.0399 (10)−0.0125 (9)−0.0057 (8)0.0006 (8)
C180.0439 (10)0.0515 (11)0.0365 (9)−0.0129 (9)−0.0018 (8)−0.0051 (8)
C190.0461 (11)0.0487 (11)0.0443 (11)−0.0118 (9)−0.0001 (8)−0.0040 (9)
C200.0498 (12)0.0614 (14)0.0629 (13)−0.0231 (10)−0.0017 (10)−0.0055 (11)
C210.0424 (11)0.0719 (15)0.0565 (13)−0.0172 (10)−0.0071 (9)−0.0070 (11)
C220.0530 (12)0.0635 (14)0.0487 (12)−0.0126 (11)−0.0120 (9)0.0030 (10)
C230.0533 (12)0.0564 (12)0.0483 (11)−0.0205 (10)−0.0099 (9)0.0038 (9)
C240.0591 (14)0.0552 (14)0.0684 (15)−0.0133 (11)−0.0091 (12)0.0029 (11)
C250.0785 (18)0.0565 (15)0.105 (2)−0.0147 (13)−0.0237 (16)0.0202 (14)
S1—C161.747 (2)C9—H90.9300
S1—C11.752 (2)C10—H100.9300
O1—C111.194 (3)C12—C131.447 (4)
O2—C111.321 (3)C12—H12A0.9700
O2—C121.448 (3)C12—H12B0.9700
O3—C151.204 (2)C13—H13A0.9600
O4—C241.341 (3)C13—H13B0.9600
O4—C191.402 (2)C13—H13C0.9600
O5—C241.183 (3)C14—H14A0.9600
N1—C11.270 (3)C14—H14B0.9600
N1—C41.412 (3)C14—H14C0.9600
N2—C11.363 (2)C15—C161.487 (3)
N2—C151.382 (2)C16—C171.336 (3)
N2—C21.479 (2)C17—C181.451 (3)
C2—C51.518 (2)C17—H170.9300
C2—C31.523 (3)C18—C231.391 (3)
C2—H20.9800C18—C191.397 (3)
C3—C41.339 (3)C19—C201.373 (3)
C3—C111.473 (3)C20—C211.380 (3)
C4—C141.501 (3)C20—H200.9300
C5—C101.373 (3)C21—C221.370 (3)
C5—C61.379 (3)C21—H210.9300
C6—C71.377 (3)C22—C231.375 (3)
C6—H60.9300C22—H220.9300
C7—C81.364 (4)C23—H230.9300
C7—H70.9300C24—C251.481 (3)
C8—C91.365 (4)C25—H25A0.9600
C8—H80.9300C25—H25B0.9600
C9—C101.385 (3)C25—H25C0.9600
C16—S1—C191.39 (9)C12—C13—H13A109.5
C11—O2—C12116.05 (18)C12—C13—H13B109.5
C24—O4—C19118.48 (17)H13A—C13—H13B109.5
C1—N1—C4116.62 (18)C12—C13—H13C109.5
C1—N2—C15116.40 (16)H13A—C13—H13C109.5
C1—N2—C2121.05 (16)H13B—C13—H13C109.5
C15—N2—C2122.13 (15)C4—C14—H14A109.5
N1—C1—N2126.93 (18)C4—C14—H14B109.5
N1—C1—S1121.26 (15)H14A—C14—H14B109.5
N2—C1—S1111.80 (14)C4—C14—H14C109.5
N2—C2—C5109.63 (14)H14A—C14—H14C109.5
N2—C2—C3107.89 (15)H14B—C14—H14C109.5
C5—C2—C3112.53 (15)O3—C15—N2123.80 (17)
N2—C2—H2108.9O3—C15—C16126.21 (18)
C5—C2—H2108.9N2—C15—C16109.98 (16)
C3—C2—H2108.9C17—C16—C15119.85 (18)
C4—C3—C11121.68 (19)C17—C16—S1129.76 (16)
C4—C3—C2122.34 (18)C15—C16—S1110.33 (14)
C11—C3—C2115.93 (17)C16—C17—C18130.97 (19)
C3—C4—N1122.26 (19)C16—C17—H17114.5
C3—C4—C14126.5 (2)C18—C17—H17114.5
N1—C4—C14111.25 (19)C23—C18—C19116.47 (18)
C10—C5—C6118.94 (18)C23—C18—C17124.65 (19)
C10—C5—C2120.72 (17)C19—C18—C17118.87 (18)
C6—C5—C2120.33 (17)C20—C19—C18122.2 (2)
C7—C6—C5120.7 (2)C20—C19—O4119.12 (19)
C7—C6—H6119.6C18—C19—O4118.50 (18)
C5—C6—H6119.6C19—C20—C21119.4 (2)
C8—C7—C6120.0 (2)C19—C20—H20120.3
C8—C7—H7120.0C21—C20—H20120.3
C6—C7—H7120.0C22—C21—C20120.1 (2)
C7—C8—C9119.8 (2)C22—C21—H21119.9
C7—C8—H8120.1C20—C21—H21119.9
C9—C8—H8120.1C21—C22—C23120.0 (2)
C8—C9—C10120.5 (2)C21—C22—H22120.0
C8—C9—H9119.8C23—C22—H22120.0
C10—C9—H9119.8C22—C23—C18121.9 (2)
C5—C10—C9120.0 (2)C22—C23—H23119.1
C5—C10—H10120.0C18—C23—H23119.1
C9—C10—H10120.0O5—C24—O4121.8 (2)
O1—C11—O2121.8 (2)O5—C24—C25126.7 (3)
O1—C11—C3126.4 (2)O4—C24—C25111.4 (2)
O2—C11—C3111.81 (18)C24—C25—H25A109.5
C13—C12—O2108.6 (2)C24—C25—H25B109.5
C13—C12—H12A110.0H25A—C25—H25B109.5
O2—C12—H12A110.0C24—C25—H25C109.5
C13—C12—H12B110.0H25A—C25—H25C109.5
O2—C12—H12B110.0H25B—C25—H25C109.5
H12A—C12—H12B108.4
C4—N1—C1—N22.8 (3)C12—O2—C11—C3−176.56 (17)
C4—N1—C1—S1−175.81 (16)C4—C3—C11—O19.3 (4)
C15—N2—C1—N1−175.5 (2)C2—C3—C11—O1−168.3 (2)
C2—N2—C1—N111.7 (3)C4—C3—C11—O2−172.59 (19)
C15—N2—C1—S13.2 (2)C2—C3—C11—O29.8 (2)
C2—N2—C1—S1−169.56 (13)C11—O2—C12—C13−179.7 (2)
C16—S1—C1—N1177.52 (19)C1—N2—C15—O3177.60 (18)
C16—S1—C1—N2−1.30 (15)C2—N2—C15—O3−9.7 (3)
C1—N2—C2—C5103.91 (19)C1—N2—C15—C16−3.7 (2)
C15—N2—C2—C5−68.5 (2)C2—N2—C15—C16168.97 (15)
C1—N2—C2—C3−18.9 (2)O3—C15—C16—C173.7 (3)
C15—N2—C2—C3168.69 (16)N2—C15—C16—C17−174.93 (17)
N2—C2—C3—C415.1 (3)O3—C15—C16—S1−178.82 (17)
C5—C2—C3—C4−106.0 (2)N2—C15—C16—S12.55 (19)
N2—C2—C3—C11−167.40 (15)C1—S1—C16—C17176.4 (2)
C5—C2—C3—C1171.5 (2)C1—S1—C16—C15−0.73 (14)
C11—C3—C4—N1179.53 (19)C15—C16—C17—C18174.58 (18)
C2—C3—C4—N1−3.1 (3)S1—C16—C17—C18−2.3 (3)
C11—C3—C4—C140.7 (4)C16—C17—C18—C235.5 (3)
C2—C3—C4—C14178.1 (2)C16—C17—C18—C19−174.4 (2)
C1—N1—C4—C3−7.1 (3)C23—C18—C19—C20−1.4 (3)
C1—N1—C4—C14171.9 (2)C17—C18—C19—C20178.47 (19)
N2—C2—C5—C10114.6 (2)C23—C18—C19—O4173.64 (17)
C3—C2—C5—C10−125.3 (2)C17—C18—C19—O4−6.5 (3)
N2—C2—C5—C6−64.7 (2)C24—O4—C19—C20−89.8 (2)
C3—C2—C5—C655.3 (2)C24—O4—C19—C1894.9 (2)
C10—C5—C6—C7−0.7 (3)C18—C19—C20—C211.3 (3)
C2—C5—C6—C7178.63 (19)O4—C19—C20—C21−173.78 (19)
C5—C6—C7—C80.3 (4)C19—C20—C21—C22−0.2 (3)
C6—C7—C8—C90.6 (4)C20—C21—C22—C23−0.6 (3)
C7—C8—C9—C10−1.1 (4)C21—C22—C23—C180.4 (3)
C6—C5—C10—C90.3 (3)C19—C18—C23—C220.6 (3)
C2—C5—C10—C9−179.1 (2)C17—C18—C23—C22−179.28 (19)
C8—C9—C10—C50.6 (4)C19—O4—C24—O55.5 (4)
C12—O2—C11—O11.7 (3)C19—O4—C24—C25−172.2 (2)
Cg1 is the centroid of the S1/C1/N2/C15/C16 ring.
D—H···AD—HH···AD···AD—H···A
C2—H2···O5i0.982.583.532 (3)163
C12—H12a···Cg1i0.972.983.902 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1/C1/N2/C15/C16 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O5i0.982.583.532 (3)163
C12—H12a⋯Cg1i0.972.983.902 (3)160

Symmetry code: (i) .

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