| Literature DB >> 24109346 |
Nikhath Fathima1, H Nagarajaiah, Noor Shahina Begum.
Abstract
In the title mol-ecule, C24H19BrN2O5S, the pyrimidine ring is in a flattened half-chair conformation and the 4-acet-oxy-phenyl group is substituted axially to this ring. The thia-zole ring is essentially planar [with a maximum deviation of 0.012 (2) Å for the N atom] and forms dihedral angles of 17.65 (13) and 88.95 (11)° with the bromo- and acet-oxy-substituted benzene rings, respectively. The dihedral angle between the benzene rings is 81.84 (13) Å. In the crystal, pairs of weak C-H⋯O hydrogen bonds lead to the formation of inversion dimers. A weak C-H⋯π inter-action and π-π stacking inter-actions with centroid-centroid distances of 3.5903 (14) Å are observed.Entities:
Year: 2013 PMID: 24109346 PMCID: PMC3793759 DOI: 10.1107/S1600536813019132
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C24H19BrN2O5S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4777 reflections | |
| θ = 2.8–27.0° | |
| µ = 2.00 mm−1 | |
| α = 106.425 (1)° | |
| β = 104.700 (2)° | Block, yellow |
| γ = 106.296 (1)° | 0.18 × 0.16 × 0.16 mm |
| Bruker SMART APEX CCD detector diffractometer | 4777 independent reflections |
| Radiation source: fine-focus sealed tube | 3989 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.0°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 9029 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4777 reflections | (Δ/σ)max < 0.001 |
| 301 parameters | Δρmax = 0.58 e Å−3 |
| 0 restraints | Δρmin = −0.61 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.3032 (4) | 0.5765 (2) | 0.84902 (18) | 0.0216 (5) | |
| H1A | 0.4212 | 0.6045 | 0.9093 | 0.032* | |
| H1B | 0.2507 | 0.4862 | 0.8164 | 0.032* | |
| H1C | 0.2083 | 0.6040 | 0.8716 | 0.032* | |
| C2 | 0.3542 (3) | 0.5692 (2) | 0.42420 (17) | 0.0137 (4) | |
| C3 | 0.4784 (3) | 0.6889 (2) | 0.51728 (17) | 0.0135 (4) | |
| C4 | 0.6434 (4) | 0.9217 (2) | 1.08072 (18) | 0.0294 (6) | |
| H4A | 0.7732 | 0.9210 | 1.1031 | 0.044* | |
| H4B | 0.5811 | 0.9043 | 1.1291 | 0.044* | |
| H4C | 0.6517 | 1.0030 | 1.0800 | 0.044* | |
| C5 | 0.5037 (3) | 0.7934 (2) | 0.70450 (16) | 0.0125 (4) | |
| H5 | 0.6450 | 0.8395 | 0.7254 | 0.015* | |
| C6 | 0.4688 (3) | 0.7494 (2) | 0.79134 (17) | 0.0139 (4) | |
| C7 | 0.3495 (3) | 0.6308 (2) | 0.77040 (17) | 0.0141 (4) | |
| C8 | 0.5830 (3) | 0.8511 (2) | 0.89783 (17) | 0.0164 (5) | |
| C9 | 0.3027 (3) | 0.5690 (2) | 0.59347 (17) | 0.0129 (4) | |
| C10 | 0.2005 (3) | 0.8465 (2) | 0.67420 (17) | 0.0164 (5) | |
| H10 | 0.1380 | 0.7744 | 0.6844 | 0.020* | |
| C11 | 0.3962 (3) | 0.8789 (2) | 0.68289 (16) | 0.0129 (4) | |
| C12 | 0.4888 (3) | 0.9866 (2) | 0.66788 (18) | 0.0169 (5) | |
| H12 | 0.6196 | 1.0090 | 0.6737 | 0.020* | |
| C13 | 0.3871 (4) | 1.0614 (2) | 0.64419 (18) | 0.0196 (5) | |
| H13 | 0.4489 | 1.1333 | 0.6336 | 0.024* | |
| C14 | 0.1933 (4) | 1.0274 (2) | 0.63663 (17) | 0.0177 (5) | |
| C15 | 0.0973 (3) | 0.9204 (2) | 0.65043 (19) | 0.0190 (5) | |
| H15 | −0.0339 | 0.8980 | 0.6440 | 0.023* | |
| C16 | 0.0214 (4) | 1.1615 (2) | 0.6767 (2) | 0.0237 (5) | |
| C17 | −0.0856 (4) | 1.2323 (2) | 0.6298 (2) | 0.0259 (6) | |
| H17A | −0.1463 | 1.2671 | 0.6763 | 0.039* | |
| H17B | −0.1848 | 1.1760 | 0.5620 | 0.039* | |
| H17C | 0.0057 | 1.2991 | 0.6213 | 0.039* | |
| C18 | 0.3621 (3) | 0.5584 (2) | 0.32793 (17) | 0.0145 (4) | |
| H18 | 0.4543 | 0.6275 | 0.3266 | 0.017* | |
| C19 | 0.2483 (3) | 0.4550 (2) | 0.22544 (18) | 0.0163 (5) | |
| C20 | 0.1439 (3) | 0.3325 (2) | 0.21514 (19) | 0.0180 (5) | |
| H20 | 0.1464 | 0.3160 | 0.2760 | 0.022* | |
| C21 | 0.0370 (4) | 0.2353 (2) | 0.1167 (2) | 0.0244 (5) | |
| H21 | −0.0314 | 0.1550 | 0.1121 | 0.029* | |
| C22 | 0.0323 (4) | 0.2580 (3) | 0.0253 (2) | 0.0322 (6) | |
| H22 | −0.0401 | 0.1931 | −0.0408 | 0.039* | |
| C23 | 0.1350 (5) | 0.3770 (3) | 0.0321 (2) | 0.0355 (7) | |
| H23 | 0.1331 | 0.3922 | −0.0293 | 0.043* | |
| C24 | 0.2407 (4) | 0.4736 (2) | 0.13075 (19) | 0.0257 (6) | |
| Br1 | 0.37745 (6) | 0.63467 (3) | 0.13393 (2) | 0.04578 (13) | |
| N1 | 0.4376 (3) | 0.68110 (17) | 0.60657 (14) | 0.0122 (4) | |
| N2 | 0.2509 (3) | 0.53974 (17) | 0.66529 (14) | 0.0150 (4) | |
| O1 | 0.5953 (2) | 0.78204 (15) | 0.51788 (12) | 0.0176 (3) | |
| O2 | 0.7097 (2) | 0.94816 (15) | 0.91182 (13) | 0.0216 (4) | |
| O3 | 0.5290 (3) | 0.82642 (16) | 0.97517 (13) | 0.0251 (4) | |
| O4 | 0.0946 (3) | 1.10282 (16) | 0.60848 (13) | 0.0243 (4) | |
| O5 | 0.0390 (4) | 1.1543 (2) | 0.76119 (17) | 0.0451 (6) | |
| S1 | 0.20567 (8) | 0.46190 (5) | 0.46166 (4) | 0.01442 (13) |
| C1 | 0.0278 (13) | 0.0208 (12) | 0.0168 (11) | 0.0060 (10) | 0.0100 (10) | 0.0095 (9) |
| C2 | 0.0122 (11) | 0.0147 (10) | 0.0162 (10) | 0.0067 (9) | 0.0051 (9) | 0.0073 (9) |
| C3 | 0.0142 (11) | 0.0164 (11) | 0.0136 (10) | 0.0087 (9) | 0.0055 (8) | 0.0076 (9) |
| C4 | 0.0452 (17) | 0.0241 (13) | 0.0095 (11) | 0.0075 (12) | 0.0061 (11) | 0.0022 (10) |
| C5 | 0.0119 (10) | 0.0130 (10) | 0.0105 (9) | 0.0036 (8) | 0.0030 (8) | 0.0036 (8) |
| C6 | 0.0152 (11) | 0.0178 (11) | 0.0109 (10) | 0.0093 (9) | 0.0047 (8) | 0.0055 (9) |
| C7 | 0.0158 (11) | 0.0173 (11) | 0.0124 (10) | 0.0081 (9) | 0.0065 (9) | 0.0070 (9) |
| C8 | 0.0202 (12) | 0.0189 (11) | 0.0129 (10) | 0.0118 (10) | 0.0047 (9) | 0.0067 (9) |
| C9 | 0.0119 (10) | 0.0137 (10) | 0.0130 (10) | 0.0062 (9) | 0.0031 (8) | 0.0051 (8) |
| C10 | 0.0162 (11) | 0.0138 (10) | 0.0167 (11) | 0.0028 (9) | 0.0054 (9) | 0.0057 (9) |
| C11 | 0.0150 (11) | 0.0131 (10) | 0.0081 (9) | 0.0044 (9) | 0.0032 (8) | 0.0021 (8) |
| C12 | 0.0165 (11) | 0.0170 (11) | 0.0180 (11) | 0.0059 (9) | 0.0087 (9) | 0.0061 (9) |
| C13 | 0.0283 (13) | 0.0149 (11) | 0.0195 (11) | 0.0085 (10) | 0.0119 (10) | 0.0090 (9) |
| C14 | 0.0257 (13) | 0.0187 (11) | 0.0119 (10) | 0.0139 (10) | 0.0058 (9) | 0.0055 (9) |
| C15 | 0.0138 (11) | 0.0199 (11) | 0.0216 (11) | 0.0062 (9) | 0.0040 (9) | 0.0079 (9) |
| C16 | 0.0229 (13) | 0.0229 (12) | 0.0249 (13) | 0.0114 (11) | 0.0065 (10) | 0.0075 (10) |
| C17 | 0.0267 (14) | 0.0229 (13) | 0.0294 (13) | 0.0148 (11) | 0.0075 (11) | 0.0085 (11) |
| C18 | 0.0148 (11) | 0.0145 (10) | 0.0152 (10) | 0.0067 (9) | 0.0055 (9) | 0.0058 (9) |
| C19 | 0.0153 (11) | 0.0206 (11) | 0.0150 (10) | 0.0100 (10) | 0.0059 (9) | 0.0061 (9) |
| C20 | 0.0148 (11) | 0.0212 (12) | 0.0186 (11) | 0.0080 (10) | 0.0076 (9) | 0.0060 (9) |
| C21 | 0.0181 (12) | 0.0206 (12) | 0.0249 (13) | 0.0029 (10) | 0.0067 (10) | 0.0005 (10) |
| C22 | 0.0327 (15) | 0.0285 (14) | 0.0182 (12) | 0.0047 (12) | 0.0028 (11) | −0.0027 (11) |
| C23 | 0.0506 (18) | 0.0353 (16) | 0.0148 (12) | 0.0130 (14) | 0.0091 (12) | 0.0072 (11) |
| C24 | 0.0346 (15) | 0.0217 (12) | 0.0172 (12) | 0.0082 (11) | 0.0081 (11) | 0.0059 (10) |
| Br1 | 0.0837 (3) | 0.02598 (16) | 0.01761 (15) | 0.00523 (15) | 0.01693 (15) | 0.01100 (11) |
| N1 | 0.0133 (9) | 0.0127 (9) | 0.0109 (8) | 0.0053 (7) | 0.0046 (7) | 0.0046 (7) |
| N2 | 0.0154 (9) | 0.0158 (9) | 0.0133 (9) | 0.0043 (8) | 0.0053 (7) | 0.0063 (7) |
| O1 | 0.0202 (8) | 0.0156 (8) | 0.0158 (8) | 0.0038 (7) | 0.0076 (7) | 0.0063 (6) |
| O2 | 0.0247 (9) | 0.0173 (8) | 0.0163 (8) | 0.0032 (7) | 0.0052 (7) | 0.0041 (7) |
| O3 | 0.0368 (11) | 0.0193 (8) | 0.0110 (8) | 0.0030 (8) | 0.0080 (7) | 0.0027 (7) |
| O4 | 0.0357 (10) | 0.0278 (9) | 0.0220 (9) | 0.0226 (8) | 0.0133 (8) | 0.0143 (7) |
| O5 | 0.0676 (16) | 0.0675 (16) | 0.0336 (11) | 0.0522 (14) | 0.0300 (11) | 0.0293 (11) |
| S1 | 0.0143 (3) | 0.0142 (3) | 0.0112 (2) | 0.0025 (2) | 0.0034 (2) | 0.0038 (2) |
| C1—C7 | 1.500 (3) | C11—C12 | 1.385 (3) |
| C1—H1A | 0.9600 | C12—C13 | 1.391 (3) |
| C1—H1B | 0.9600 | C12—H12 | 0.9300 |
| C1—H1C | 0.9600 | C13—C14 | 1.381 (4) |
| C2—C18 | 1.344 (3) | C13—H13 | 0.9300 |
| C2—C3 | 1.487 (3) | C14—C15 | 1.378 (3) |
| C2—S1 | 1.754 (2) | C14—O4 | 1.402 (3) |
| C3—O1 | 1.211 (3) | C15—H15 | 0.9300 |
| C3—N1 | 1.391 (3) | C16—O5 | 1.195 (3) |
| C4—O3 | 1.448 (3) | C16—O4 | 1.354 (3) |
| C4—H4A | 0.9600 | C16—C17 | 1.497 (3) |
| C4—H4B | 0.9600 | C17—H17A | 0.9600 |
| C4—H4C | 0.9600 | C17—H17B | 0.9600 |
| C5—N1 | 1.478 (3) | C17—H17C | 0.9600 |
| C5—C6 | 1.515 (3) | C18—C19 | 1.456 (3) |
| C5—C11 | 1.525 (3) | C18—H18 | 0.9300 |
| C5—H5 | 0.9800 | C19—C24 | 1.403 (3) |
| C6—C7 | 1.352 (3) | C19—C20 | 1.403 (3) |
| C6—C8 | 1.483 (3) | C20—C21 | 1.387 (3) |
| C7—N2 | 1.417 (3) | C20—H20 | 0.9300 |
| C8—O2 | 1.209 (3) | C21—C22 | 1.382 (4) |
| C8—O3 | 1.335 (3) | C21—H21 | 0.9300 |
| C9—N2 | 1.275 (3) | C22—C23 | 1.381 (4) |
| C9—N1 | 1.370 (3) | C22—H22 | 0.9300 |
| C9—S1 | 1.750 (2) | C23—C24 | 1.384 (4) |
| C10—C15 | 1.391 (3) | C23—H23 | 0.9300 |
| C10—C11 | 1.391 (3) | C24—Br1 | 1.898 (3) |
| C10—H10 | 0.9300 | ||
| C7—C1—H1A | 109.5 | C14—C13—H13 | 120.4 |
| C7—C1—H1B | 109.5 | C12—C13—H13 | 120.4 |
| H1A—C1—H1B | 109.5 | C15—C14—C13 | 121.7 (2) |
| C7—C1—H1C | 109.5 | C15—C14—O4 | 121.2 (2) |
| H1A—C1—H1C | 109.5 | C13—C14—O4 | 117.1 (2) |
| H1B—C1—H1C | 109.5 | C14—C15—C10 | 118.7 (2) |
| C18—C2—C3 | 119.9 (2) | C14—C15—H15 | 120.7 |
| C18—C2—S1 | 129.72 (18) | C10—C15—H15 | 120.7 |
| C3—C2—S1 | 110.36 (16) | O5—C16—O4 | 123.4 (2) |
| O1—C3—N1 | 123.4 (2) | O5—C16—C17 | 126.0 (2) |
| O1—C3—C2 | 126.8 (2) | O4—C16—C17 | 110.6 (2) |
| N1—C3—C2 | 109.76 (19) | C16—C17—H17A | 109.5 |
| O3—C4—H4A | 109.5 | C16—C17—H17B | 109.5 |
| O3—C4—H4B | 109.5 | H17A—C17—H17B | 109.5 |
| H4A—C4—H4B | 109.5 | C16—C17—H17C | 109.5 |
| O3—C4—H4C | 109.5 | H17A—C17—H17C | 109.5 |
| H4A—C4—H4C | 109.5 | H17B—C17—H17C | 109.5 |
| H4B—C4—H4C | 109.5 | C2—C18—C19 | 129.8 (2) |
| N1—C5—C6 | 108.19 (17) | C2—C18—H18 | 115.1 |
| N1—C5—C11 | 109.45 (16) | C19—C18—H18 | 115.1 |
| C6—C5—C11 | 113.06 (18) | C24—C19—C20 | 116.4 (2) |
| N1—C5—H5 | 108.7 | C24—C19—C18 | 120.8 (2) |
| C6—C5—H5 | 108.7 | C20—C19—C18 | 122.8 (2) |
| C11—C5—H5 | 108.7 | C21—C20—C19 | 121.8 (2) |
| C7—C6—C8 | 126.3 (2) | C21—C20—H20 | 119.1 |
| C7—C6—C5 | 122.34 (19) | C19—C20—H20 | 119.1 |
| C8—C6—C5 | 111.35 (19) | C22—C21—C20 | 119.9 (2) |
| C6—C7—N2 | 121.6 (2) | C22—C21—H21 | 120.1 |
| C6—C7—C1 | 127.3 (2) | C20—C21—H21 | 120.1 |
| N2—C7—C1 | 111.08 (19) | C23—C22—C21 | 120.1 (2) |
| O2—C8—O3 | 123.7 (2) | C23—C22—H22 | 119.9 |
| O2—C8—C6 | 122.5 (2) | C21—C22—H22 | 119.9 |
| O3—C8—C6 | 113.8 (2) | C22—C23—C24 | 119.6 (3) |
| N2—C9—N1 | 126.87 (19) | C22—C23—H23 | 120.2 |
| N2—C9—S1 | 121.52 (17) | C24—C23—H23 | 120.2 |
| N1—C9—S1 | 111.59 (16) | C23—C24—C19 | 122.2 (2) |
| C15—C10—C11 | 120.8 (2) | C23—C24—Br1 | 117.3 (2) |
| C15—C10—H10 | 119.6 | C19—C24—Br1 | 120.52 (18) |
| C11—C10—H10 | 119.6 | C9—N1—C3 | 116.59 (18) |
| C12—C11—C10 | 119.3 (2) | C9—N1—C5 | 120.26 (18) |
| C12—C11—C5 | 120.8 (2) | C3—N1—C5 | 122.05 (18) |
| C10—C11—C5 | 119.8 (2) | C9—N2—C7 | 116.48 (19) |
| C11—C12—C13 | 120.4 (2) | C8—O3—C4 | 115.0 (2) |
| C11—C12—H12 | 119.8 | C16—O4—C14 | 118.97 (19) |
| C13—C12—H12 | 119.8 | C9—S1—C2 | 91.67 (11) |
| C14—C13—C12 | 119.1 (2) | ||
| C18—C2—C3—O1 | −1.9 (4) | C19—C20—C21—C22 | 0.3 (4) |
| S1—C2—C3—O1 | −179.35 (19) | C20—C21—C22—C23 | 0.5 (4) |
| C18—C2—C3—N1 | 176.6 (2) | C21—C22—C23—C24 | −0.7 (5) |
| S1—C2—C3—N1 | −0.9 (2) | C22—C23—C24—C19 | 0.2 (5) |
| N1—C5—C6—C7 | −16.1 (3) | C22—C23—C24—Br1 | −179.8 (2) |
| C11—C5—C6—C7 | 105.3 (2) | C20—C19—C24—C23 | 0.5 (4) |
| N1—C5—C6—C8 | 162.92 (17) | C18—C19—C24—C23 | 179.5 (3) |
| C11—C5—C6—C8 | −75.7 (2) | C20—C19—C24—Br1 | −179.49 (17) |
| C8—C6—C7—N2 | −178.3 (2) | C18—C19—C24—Br1 | −0.4 (3) |
| C5—C6—C7—N2 | 0.6 (3) | N2—C9—N1—C3 | 176.5 (2) |
| C8—C6—C7—C1 | 1.2 (4) | S1—C9—N1—C3 | −2.1 (2) |
| C5—C6—C7—C1 | −179.9 (2) | N2—C9—N1—C5 | −15.3 (3) |
| C7—C6—C8—O2 | 168.1 (2) | S1—C9—N1—C5 | 166.10 (15) |
| C5—C6—C8—O2 | −10.9 (3) | O1—C3—N1—C9 | −179.5 (2) |
| C7—C6—C8—O3 | −13.6 (3) | C2—C3—N1—C9 | 2.0 (3) |
| C5—C6—C8—O3 | 167.38 (18) | O1—C3—N1—C5 | 12.5 (3) |
| C15—C10—C11—C12 | 0.2 (3) | C2—C3—N1—C5 | −166.05 (18) |
| C15—C10—C11—C5 | −177.5 (2) | C6—C5—N1—C9 | 22.8 (3) |
| N1—C5—C11—C12 | −102.4 (2) | C11—C5—N1—C9 | −100.8 (2) |
| C6—C5—C11—C12 | 137.0 (2) | C6—C5—N1—C3 | −169.64 (18) |
| N1—C5—C11—C10 | 75.3 (2) | C11—C5—N1—C3 | 66.8 (2) |
| C6—C5—C11—C10 | −45.4 (3) | N1—C9—N2—C7 | −2.9 (3) |
| C10—C11—C12—C13 | −0.1 (3) | S1—C9—N2—C7 | 175.63 (15) |
| C5—C11—C12—C13 | 177.53 (19) | C6—C7—N2—C9 | 10.2 (3) |
| C11—C12—C13—C14 | 0.5 (3) | C1—C7—N2—C9 | −169.4 (2) |
| C12—C13—C14—C15 | −1.0 (3) | O2—C8—O3—C4 | −4.2 (3) |
| C12—C13—C14—O4 | −177.54 (19) | C6—C8—O3—C4 | 177.6 (2) |
| C13—C14—C15—C10 | 1.0 (3) | O5—C16—O4—C14 | 1.3 (4) |
| O4—C14—C15—C10 | 177.5 (2) | C17—C16—O4—C14 | −177.5 (2) |
| C11—C10—C15—C14 | −0.6 (3) | C15—C14—O4—C16 | 63.7 (3) |
| C3—C2—C18—C19 | −176.1 (2) | C13—C14—O4—C16 | −119.7 (2) |
| S1—C2—C18—C19 | 0.8 (4) | N2—C9—S1—C2 | −177.4 (2) |
| C2—C18—C19—C24 | 163.0 (2) | N1—C9—S1—C2 | 1.26 (17) |
| C2—C18—C19—C20 | −18.0 (4) | C18—C2—S1—C9 | −177.3 (2) |
| C24—C19—C20—C21 | −0.7 (3) | C3—C2—S1—C9 | −0.18 (16) |
| C18—C19—C20—C21 | −179.7 (2) |
| H··· | ||||
| C13—H13···O1i | 0.93 | 2.60 | 3.343 (4) | 138 |
| C10—H10··· | 0.93 | 2.61 | 3.513 (4) | 147 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C5–C7/C9/N1/N2 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C13—H13⋯O1i | 0.93 | 2.60 | 3.343 (4) | 138 |
| C10—H10⋯ | 0.93 | 2.61 | 3.513 (4) | 147 |
Symmetry codes: (i) ; (ii) .