Literature DB >> 36072149

Crystal structure and Hirshfeld surface analysis of 5-amino-5'-bromo-2'-oxo-2,3-di-hydro-1H-spiro-[imidazo[1,2-a]pyridine-7,3'-indoline]-6,8-dicarbo-nitrile dimethyl sulfoxide disolvate.

Farid N Naghiyev1, Victor N Khrustalev2,3, Anton P Novikov2, Mehmet Akkurt4, Rovnag M Rzayev5, Anzurat A Akobirshoeva6, Ibrahim G Mamedov1.   

Abstract

In the title compound, C16H11BrN6O·2C2H6OS, the 1,2,3,7-tetra-hydro-imid-azo[1,2-a]pyridine ring system and the oxindole moiety are both nearly planar [maximum deviations = 0.042 (2) and 0.115 (2) Å, respectively] and their planes form a dihedral angle of 86.04 (5)° with each other. Inter-molecular N-H⋯O, C-H⋯O and C-H⋯N hydrogen bonds link mol-ecules in the crystal through the O atoms of the solvent mol-ecules, generating a three-dimensional network. A Hirshfeld surface analysis was performed to further analyse the inter-molecular inter-actions. © Naghiyev et al. 2022.

Entities:  

Keywords:  Hirshfeld surface analysis; crystal structure; dimethyl sulfoxide; disorder; hydrogen bonds; spiro­[imidazo[1,2-a]pyridine

Year:  2022        PMID: 36072149      PMCID: PMC9431780          DOI: 10.1107/S2056989022004741

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

C—C and C—N bond-forming reactions represent a significant synthetic class because they play critical roles in various applications in different fields of chemistry (Yadigarov et al., 2009 ▸; Abdelhamid et al., 2011 ▸; Yin et al., 2020 ▸; Khalilov et al., 2021 ▸). Nitro­gen heterocycles, particularly those including the spiro­[imidazo[1,2-a]pyridine] moiety, play a key role in medi­cinal chemistry (Han et al., 2008 ▸; Mamedov et al., 2020 ▸; Samaneh et al., 2021 ▸). The conjugate addition to oxo­in­dol­inylidenemalono­nitriles has been well studied in simple two-component reactions with respect to producing spiro derivatives (Lu et al., 2012 ▸; Jun et al., 2019 ▸). We have previously reported the three-component reaction of 2-(2-oxoindolin-3-yl­idene)malono­nitrile with malono­nitrile and ethyl­enedi­amine which resulted in 5-amino-2′-oxo-2,3-di­hydro-1H-spiro­[imidazo[1,2-a]pyridine-7,3′-indoline]-6,8-dicarbo­nitrile (Magerramov et al., 2018 ▸). In the framework of our ongoing structural studies (Naghiyev et al., 2020 ▸, 2021a ▸,b ▸), herein the crystal structure and Hirshfeld surface analysis of 5-amino-5′-bromo-2′-oxo-2,3-di­hydro-1H-spiro­[imidazo[1,2-a]pyridine-7,3′-indoline]-6,8-dicarbo­nitrile, (1), is reported.

Structural commentary

In the title compound, (1) (see Scheme and Fig. 1 ▸), the 1,2,3,7-tetra­hydro­imidazo[1,2-a]pyridine ring system (N1/N4/C2/C3/C5–C8/C8A) and the oxindole moiety (O1/N2/C1/C7/C11–C16) are nearly planar, with maximum deviations of 0.042 (2) Å for C3 and 0.115 (2) Å for O1. These ring systems make a dihedral angle of 86.04 (5)° with each other. The cyano (–C≡N) and amine (NH2) groups form an inter­molecular hydrogen bond with one dimethyl sulfoxide (DMSO) group, giving an S(10) motif (Bernstein et al., 1995 ▸) (Table 1 ▸).
Figure 1

The title mol­ecule with the labelling scheme and displacement ellipsoids drawn at the 50% probability level. The minor components of the disorder are not shown.

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2A i 0.901.982.855 (4)165
N1—H1⋯O2B i 0.902.002.87 (4)160
N2—H2⋯O2A ii 0.901.912.793 (5)166
N2—H2⋯O2B ii 0.901.942.82 (5)166
N5—H5A⋯O3A iii 0.902.203.034 (3)155
N5—H5B⋯O3A 0.902.062.918 (3)160
C2—H2B⋯N9iv 0.992.593.469 (4)148
C19A—H19A⋯N90.982.413.114 (5)128
C19A—H19C⋯O1v 0.982.523.392 (4)148
C20A—H20B⋯O1v 0.982.463.359 (4)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Supra­molecular features and Hirshfeld surface analysis

In the crystal, mol­ecules are linked through the O atoms of the DMSO solvent mol­ecules by inter­molecular N—H⋯O and C—H⋯O hydrogen bonds which, together with C—H⋯N hydrogen bonds, form a three-dimensional (3D) network (Table 1 ▸ and Fig. 2 ▸). The π-cloud of the C8A—N1 bond (which has some multiple-bond character) acts as an electron donor to Br1 in a kind of ‘halogen bond’, with a Br1⋯C8A(−x + 1, −y + 1, −z) distance of 3.284 (2) Å.
Figure 2

A view of the mol­ecular packing of (1) along the a-axis direction.

The Hirshfeld surfaces were calculated and the two-dimensional (2D) fingerprint plots generated using CrystalExplorer (Version 17.5; Turner et al., 2017 ▸). Fig. 3 ▸ shows the 3D Hirshfeld surface of (1) with d norm (normalized contact distance) plotted over the range from −0.6206 to 1.3180 a.u. The inter­actions given in Table 1 ▸ play a key role in the mol­ecular packing of (1).
Figure 3

View of the 3D Hirshfeld surface of (1) plotted over d norm in the range from −0.6206 to 1.3180 a.u.

The overall 2D fingerprint plot for (1) is given in Fig. 4 ▸(a), and those delineated into H⋯H, N⋯H/H⋯N, O⋯H/H⋯O, C⋯H/H⋯C and Br⋯H/H⋯Br contacts are shown in Figs. 4 ▸(b)–(f). The percentage contributions to the Hirshfeld surfaces from the various inter­atomic contacts are as follows: H⋯H [Fig. 4 ▸(b); 27.1%], N⋯H/H⋯N [Fig. 4 ▸(c); 23.8%], O⋯H/H⋯O [Fig. 4 ▸(d); 15.7%], C⋯H/H⋯C [Fig. 4 ▸(e); 13.2%] and Br⋯H/H⋯Br [Fig. 4 ▸(f); 10.2%]. Other minor contributions to the Hirshfeld surface are from Br⋯C/C⋯Br (3.9%), Br⋯N/N⋯Br (2.0%), C⋯C (1.5%), S⋯C/C⋯S (0.8%), S⋯H/H⋯S (0.6%), S⋯N/N⋯S (0.4%), O⋯N/N⋯O (0.4%) and Br⋯O/O⋯Br (0.3%).
Figure 4

The full 2D fingerprint plots for (1), showing (a) all inter­actions, and delineated into (b) H⋯H, (c) N⋯H/H⋯N, (d) O⋯H/H⋯O, (e) C⋯H/H⋯C and (f) Br⋯H/H⋯Br inter­actions. The d i and d e values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface contacts.

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016 ▸) for the 5-bromo-1,3-di­hydro-2H-indol-2-one unit of (1) gave 87 hits. The three compounds most resembling (1) are (I) (COGQAS; Nagalakshmi et al., 2014a ▸), (II) (WOPKAP; Nagalakshmi et al., 2014b ▸) and (III) (XODQOY; Nagalakshmi et al., 2014c ▸), showing very similar conformation of the mol­ecular core. In the crystal of (I), N—H⋯O hydrogen bonds lead to the formation of chains along the c-axis direction. Within the chains there are further N—H⋯O and C—H⋯O hydrogen bonds enclosing (14) ring motifs. The chains are linked via N—H⋯O and C—H⋯O hydrogen bonds involving the dimethyl sulfoxide solvent mol­ecule which acts as both an acceptor and a donor. In (II), the asymmetric unit contains two independent mol­ecules (A and B) having similar conformations. In the crystal, mol­ecules are linked by N—H⋯O hydrogen bonds, forming chains along the a axis which enclose (16) ring motifs. The rings are linked by weak N—H⋯O and C—H⋯O hydrogen bonds, and C—H⋯π inter­actions, forming sheets lying parallel to the (001) plane. In (III), two intra­molecular N—H⋯O hydrogen bonds are formed, each closing an S(6) loop. In the crystal, strong N—H⋯O hydrogen bonds lead to the formation of zigzag chains along the c axis. These are consolidated in the 3D crystal packing by weak N—H⋯O hydrogen bonding, as well as by C—H⋯O, C—H⋯Br and C—H⋯π inter­actions.

Synthesis and crystallization

To a solution of 2-(5-bromo-2-oxoindolin-3-yl­idene)malono­nitrile (1.4 g, 5.1 mmol), which was previously prepared by a known procedure (Negar et al., 2012 ▸), and malono­nitrile (0.34 g, 5.2 mmol) in methanol (25 ml), ethyl­enedi­amine (0.31 g, 5.2 mmol) was added and the mixture was stirred at room temperature for 72 h (Fig. 5 ▸). Methanol (15 ml) was removed from the reaction mixture, which was left overnight. The precipitated crystals were separated by filtration and recrystallized from an ethanol–water (1:1 v/v) solution (yield 69%; m.p. 479–480 K). Single crystals of (1) were grown from DMSO solution.
Figure 5

The synthesis of 5-amino-5′-bromo-2′-oxo-2,3-di­hydro-1H-spiro­[imidazo[1,2-a]pyridine-7,3′-indoline]-6,8-dicarbo­nitrile by a reported procedure (Magerramov et al., 2018 ▸).

1H NMR (300 MHz, DMSO-d 6, ppm): δ 3.50 (t, 4H, 2CH2N), 6.61 (s, 2H, NH2), 6.78 (d, 1H, Ar-H, 3 J H-H = 7.8 Hz), 7.35 (s, 1H, Ar-H), 7.37 (d, 1H, Ar-H, 3 J H-H = 7.8 Hz), 7.73 (s, H, NH), 10.44 (s, H, NH). 13C NMR (75 MHz, DMSO-d 6, ppm): δ 42.46 (CH2N), 45.15 (CH2N), 51.24 (Cquat), 51.71 (=Cquat), 54.69 (=Cquat), 112.02 (CHarom), 114.43 (Br—Carom), 119.63 (CN), 120.15 (CN), 128.02 (CHarom), 131.90 (CHarom), 137.83 (Carom), 140.80 (Carom), 152.19 (=Cquat), 154.76 (=Cquat), 179.67 (O=C).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The H atoms were included in calculated positions and treated as riding atoms; N—H = 0.90 Å with U iso(H) = 1.2U eq(N), and C—H = 0.95–0.99 Å with U iso(H) = 1.2 or 1.5U eq(C). Both DMSO solvent mol­ecules are disordered over two positions, with final occupancies of 0.90:0.10 for the first and 0.95:0.05 for the second mol­ecule. In the first disordered DMSO molecule, the C17B and C18B atoms of the minor component were refined isotropically. The disordered atoms O2A/O2B, O3A/O3B, C19A/C19B and C20A/C20B were refined with anisotropic displacement parameters, constrained to be the same for both components. The S—C and S—O bond lengths in both disordered DMSO mol­ecules were restrained to similarity.
Table 2

Experimental details

Crystal data
Chemical formulaC16H11BrN6O·2C2H6OS
M r 539.47
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)10.3940 (1), 26.2421 (2), 8.9860 (1)
β (°)108.056 (1)
V3)2330.32 (4)
Z 4
Radiation typeCu Kα
μ (mm−1)4.38
Crystal size (mm)0.05 × 0.03 × 0.02
 
Data collection
DiffractometerRigaku XtaLAB Synergy Dualflex HyPix
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2021)
T min, T max 0.793, 0.899
No. of measured, independent and observed [I > 2σ(I)] reflections31508, 5062, 5047
R int 0.029
(sin θ/λ)max−1)0.638
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.039, 0.094, 1.17
No. of reflections5062
No. of parameters331
No. of restraints6
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.63, −0.41

Computer programs: CrysAlis PRO (Rigaku OD, 2021 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989022004741/zv2013sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022004741/zv2013Isup2.hkl CCDC reference: 2170241 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H11BrN6O·2C2H6OSF(000) = 1104
Mr = 539.47Dx = 1.538 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 10.3940 (1) ÅCell parameters from 27880 reflections
b = 26.2421 (2) Åθ = 3.4–79.2°
c = 8.9860 (1) ŵ = 4.38 mm1
β = 108.056 (1)°T = 100 K
V = 2330.32 (4) Å3Prism, colourless
Z = 40.05 × 0.03 × 0.02 mm
Rigaku XtaLAB Synergy Dualflex HyPix diffractometer5062 independent reflections
Radiation source: micro-focus sealed X-ray tube5047 reflections with I > 2σ(I)
Detector resolution: 0 pixels mm-1Rint = 0.029
φ and ω scansθmax = 79.4°, θmin = 3.4°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2021)h = −13→13
Tmin = 0.793, Tmax = 0.899k = −31→33
31508 measured reflectionsl = −11→11
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.0287P)2 + 4.5523P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.094(Δ/σ)max = 0.003
S = 1.17Δρmax = 0.63 e Å3
5062 reflectionsΔρmin = −0.41 e Å3
331 parametersExtinction correction: SHELXL (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
6 restraintsExtinction coefficient: 0.00068 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Br10.43785 (3)0.56355 (2)0.19141 (3)0.02651 (10)
O10.84018 (19)0.31921 (7)0.4894 (2)0.0262 (4)
N10.7688 (2)0.33596 (8)−0.0737 (2)0.0236 (4)
H10.8469740.349380−0.0790350.028*
C10.7948 (2)0.36248 (9)0.4575 (3)0.0195 (5)
N20.8234 (2)0.40340 (8)0.5544 (2)0.0223 (4)
H20.8838500.4031890.6509760.027*
C20.6818 (3)0.30219 (12)−0.1925 (3)0.0311 (6)
H2A0.7303670.270499−0.2019960.037*
H2B0.6513080.319271−0.2957530.037*
C30.5622 (3)0.29063 (10)−0.1340 (3)0.0269 (6)
H3A0.4766500.303812−0.2071580.032*
H3B0.5531200.253560−0.1194620.032*
N40.5981 (2)0.31762 (8)0.0156 (2)0.0181 (4)
C50.5237 (2)0.31827 (8)0.1184 (3)0.0162 (4)
N50.4101 (2)0.28990 (8)0.0779 (2)0.0206 (4)
H5A0.3872820.271975−0.0118220.025*
H5B0.3571580.2888650.1403380.025*
C60.5691 (2)0.34678 (9)0.2534 (3)0.0175 (4)
C70.6955 (2)0.37927 (9)0.2964 (3)0.0164 (4)
C80.7672 (2)0.37480 (9)0.1734 (3)0.0170 (4)
C8A0.7175 (2)0.34454 (9)0.0441 (3)0.0169 (4)
C90.4989 (3)0.34610 (9)0.3650 (3)0.0227 (5)
N90.4511 (3)0.34703 (10)0.4650 (3)0.0313 (5)
C100.8877 (3)0.40296 (9)0.1953 (3)0.0219 (5)
N100.9860 (3)0.42647 (10)0.2186 (3)0.0321 (5)
C110.7468 (2)0.44627 (9)0.4847 (3)0.0198 (5)
C120.6681 (2)0.43415 (9)0.3327 (3)0.0173 (4)
C130.5776 (2)0.46901 (9)0.2424 (3)0.0187 (5)
H130.5234680.4611600.1386490.022*
C140.5690 (2)0.51605 (9)0.3097 (3)0.0208 (5)
C150.6498 (3)0.52928 (10)0.4587 (3)0.0244 (5)
H150.6429190.5622660.4991070.029*
C160.7414 (3)0.49383 (10)0.5490 (3)0.0243 (5)
H160.7981090.5021050.6511940.029*
S1A0.13352 (7)0.39460 (3)0.95312 (8)0.02416 (16)0.9
O2A−0.0128 (3)0.38792 (11)0.8623 (5)0.0249 (7)0.9
C17A0.2226 (3)0.38206 (13)0.8160 (4)0.0335 (7)0.9
H17A0.2141270.3458750.7876620.050*0.9
H17B0.3184150.3906640.8631950.050*0.9
H17C0.1842080.4027680.7218900.050*0.9
C18A0.1618 (4)0.46142 (14)0.9724 (5)0.0453 (9)0.9
H18A0.1269430.4775750.8693310.068*0.9
H18B0.2591150.4680531.0157900.068*0.9
H18C0.1150590.4754581.0425740.068*0.9
S1B0.0823 (6)0.4388 (2)0.9322 (8)0.0235 (12)0.1
O2B−0.024 (3)0.3988 (13)0.874 (6)0.0249 (7)0.1
C17B0.224 (2)0.4099 (11)1.073 (3)0.035 (6)*0.1
H17D0.2524310.3797261.0268360.053*0.1
H17E0.1986480.3997641.1650150.053*0.1
H17F0.2990370.4343011.1042810.053*0.1
C18B0.150 (4)0.4529 (15)0.778 (3)0.048 (8)*0.1
H18D0.1681020.4210890.7309470.072*0.1
H18E0.2341540.4721790.8192750.072*0.1
H18F0.0844010.4732840.6978800.072*0.1
S2A0.11696 (8)0.28805 (3)0.26820 (8)0.0263 (2)0.948 (2)
O3A0.24507 (19)0.25919 (7)0.2727 (2)0.0245 (4)0.95
C19A0.1529 (3)0.32357 (12)0.4465 (4)0.0286 (7)0.95
H19A0.2143200.3517280.4445560.043*0.95
H19B0.1956320.3011840.5353590.043*0.95
H19C0.0684770.3372560.4571280.043*0.95
C20A0.0076 (3)0.24245 (15)0.3136 (6)0.0422 (11)0.95
H20A−0.0275730.2192860.2246930.063*0.95
H20B−0.0678760.2601080.3349060.063*0.95
H20C0.0582160.2228930.4061310.063*0.95
S2B0.0451 (16)0.2982 (5)0.2263 (16)0.0263 (2)0.052 (2)
O3B0.165 (3)0.2865 (13)0.169 (4)0.0245 (4)0.05
C19B0.149 (6)0.306 (3)0.425 (3)0.0286 (7)0.05
H19D0.2447960.3027770.4307740.043*0.05
H19E0.1270630.2794080.4900340.043*0.05
H19F0.1334440.3395130.4630420.043*0.05
C20B0.045 (10)0.240 (2)0.326 (11)0.0422 (11)0.05
H20D−0.0201080.2417110.3853970.063*0.05
H20E0.1354420.2330280.3986040.063*0.05
H20F0.0186550.2117710.2501130.063*0.05
U11U22U33U12U13U23
Br10.02864 (16)0.01708 (14)0.03326 (17)0.00539 (10)0.00878 (11)0.00476 (10)
O10.0292 (10)0.0233 (9)0.0252 (9)0.0092 (7)0.0069 (8)0.0058 (7)
N10.0255 (11)0.0263 (11)0.0216 (10)−0.0070 (9)0.0111 (9)−0.0061 (8)
C10.0192 (11)0.0212 (11)0.0186 (11)0.0012 (9)0.0067 (9)0.0025 (9)
N20.0216 (10)0.0247 (11)0.0165 (9)0.0033 (8)−0.0002 (8)0.0011 (8)
C20.0280 (14)0.0391 (16)0.0275 (13)−0.0081 (12)0.0106 (11)−0.0137 (12)
C30.0325 (14)0.0252 (13)0.0228 (12)−0.0088 (11)0.0085 (11)−0.0084 (10)
N40.0179 (9)0.0202 (10)0.0161 (9)−0.0034 (8)0.0054 (8)−0.0035 (8)
C50.0178 (10)0.0130 (10)0.0179 (10)0.0018 (8)0.0056 (9)0.0032 (8)
N50.0214 (10)0.0218 (10)0.0192 (10)−0.0040 (8)0.0074 (8)−0.0034 (8)
C60.0196 (11)0.0148 (10)0.0188 (11)−0.0009 (9)0.0068 (9)−0.0007 (8)
C70.0185 (11)0.0136 (10)0.0164 (10)0.0000 (8)0.0044 (9)−0.0004 (8)
C80.0196 (11)0.0144 (10)0.0169 (11)−0.0012 (8)0.0054 (9)0.0008 (8)
C8A0.0176 (11)0.0136 (10)0.0192 (11)0.0012 (8)0.0052 (9)0.0021 (8)
C90.0247 (12)0.0192 (11)0.0240 (12)−0.0048 (9)0.0073 (10)−0.0059 (9)
N90.0330 (12)0.0352 (13)0.0300 (12)−0.0105 (10)0.0162 (10)−0.0130 (10)
C100.0263 (13)0.0197 (11)0.0204 (11)−0.0026 (10)0.0084 (10)−0.0031 (9)
N100.0312 (12)0.0331 (13)0.0339 (13)−0.0126 (10)0.0130 (10)−0.0100 (10)
C110.0201 (11)0.0202 (11)0.0168 (11)−0.0012 (9)0.0025 (9)0.0007 (9)
C120.0187 (11)0.0159 (11)0.0171 (11)−0.0023 (8)0.0052 (9)−0.0025 (8)
C130.0205 (11)0.0169 (11)0.0170 (11)−0.0019 (9)0.0037 (9)−0.0004 (9)
C140.0204 (11)0.0170 (11)0.0251 (12)0.0004 (9)0.0069 (10)0.0029 (9)
C150.0307 (13)0.0180 (11)0.0258 (13)−0.0031 (10)0.0106 (11)−0.0058 (10)
C160.0273 (13)0.0243 (12)0.0195 (11)−0.0049 (10)0.0046 (10)−0.0065 (10)
S1A0.0207 (3)0.0278 (4)0.0216 (3)−0.0033 (3)0.0030 (3)0.0009 (3)
O2A0.0197 (10)0.0340 (18)0.0191 (12)−0.0052 (12)0.0032 (8)0.0003 (13)
C17A0.0303 (16)0.0348 (17)0.0396 (18)−0.0050 (13)0.0172 (14)0.0012 (14)
C18A0.046 (2)0.0296 (18)0.064 (3)−0.0077 (17)0.0228 (19)−0.0129 (17)
S1B0.023 (3)0.011 (3)0.041 (3)0.004 (2)0.017 (3)0.005 (2)
O2B0.0197 (10)0.0340 (18)0.0191 (12)−0.0052 (12)0.0032 (8)0.0003 (13)
S2A0.0283 (4)0.0275 (3)0.0226 (3)0.0065 (3)0.0074 (3)0.0015 (3)
O3A0.0256 (10)0.0235 (9)0.0263 (10)0.0008 (8)0.0108 (8)−0.0013 (7)
C19A0.0278 (14)0.0235 (15)0.0378 (16)−0.0057 (13)0.0148 (12)−0.0156 (12)
C20A0.028 (2)0.0434 (18)0.062 (2)−0.0157 (15)0.023 (2)−0.0283 (17)
S2B0.0283 (4)0.0275 (3)0.0226 (3)0.0065 (3)0.0074 (3)0.0015 (3)
O3B0.0256 (10)0.0235 (9)0.0263 (10)0.0008 (8)0.0108 (8)−0.0013 (7)
C19B0.0278 (14)0.0235 (15)0.0378 (16)−0.0057 (13)0.0148 (12)−0.0156 (12)
C20B0.028 (2)0.0434 (18)0.062 (2)−0.0157 (15)0.023 (2)−0.0283 (17)
Br1—C141.909 (2)C16—H160.9500
O1—C11.229 (3)S1A—O2A1.497 (3)
N1—C8A1.344 (3)S1A—C18A1.778 (4)
N1—C21.464 (3)S1A—C17A1.787 (3)
N1—H10.9000C17A—H17A0.9800
C1—N21.356 (3)C17A—H17B0.9800
C1—C71.559 (3)C17A—H17C0.9800
N2—C111.408 (3)C18A—H18A0.9800
N2—H20.8999C18A—H18B0.9800
C2—C31.523 (4)C18A—H18C0.9800
C2—H2A0.9900S1B—O2B1.497 (4)
C2—H2B0.9900S1B—C18B1.777 (5)
C3—N41.462 (3)S1B—C17B1.787 (5)
C3—H3A0.9900C17B—H17D0.9800
C3—H3B0.9900C17B—H17E0.9800
N4—C51.377 (3)C17B—H17F0.9800
N4—C8A1.381 (3)C18B—H18D0.9800
C5—N51.347 (3)C18B—H18E0.9800
C5—C61.378 (3)C18B—H18F0.9800
N5—H5A0.8996S2A—O3A1.521 (2)
N5—H5B0.8999S2A—C20A1.782 (3)
C6—C91.412 (3)S2A—C19A1.790 (3)
C6—C71.513 (3)C19A—H19A0.9800
C7—C81.517 (3)C19A—H19B0.9800
C7—C121.523 (3)C19A—H19C0.9800
C8—C8A1.369 (3)C20A—H20A0.9800
C8—C101.414 (3)C20A—H20B0.9800
C9—N91.154 (4)C20A—H20C0.9800
C10—N101.156 (4)S2B—O3B1.522 (4)
C11—C161.384 (4)S2B—C20B1.782 (5)
C11—C121.394 (3)S2B—C19B1.790 (4)
C12—C131.381 (3)C19B—H19D0.9800
C13—C141.390 (3)C19B—H19E0.9800
C13—H130.9500C19B—H19F0.9800
C14—C151.386 (4)C20B—H20D0.9800
C15—C161.397 (4)C20B—H20E0.9800
C15—H150.9500C20B—H20F0.9800
C8A—N1—C2111.7 (2)C11—C16—H16121.1
C8A—N1—H1124.1C15—C16—H16121.1
C2—N1—H1124.2O2A—S1A—C18A106.15 (19)
O1—C1—N2126.2 (2)O2A—S1A—C17A105.0 (2)
O1—C1—C7125.0 (2)C18A—S1A—C17A98.23 (18)
N2—C1—C7108.8 (2)S1A—C17A—H17A109.5
C1—N2—C11111.5 (2)S1A—C17A—H17B109.5
C1—N2—H2124.2H17A—C17A—H17B109.5
C11—N2—H2124.3S1A—C17A—H17C109.5
N1—C2—C3104.8 (2)H17A—C17A—H17C109.5
N1—C2—H2A110.8H17B—C17A—H17C109.5
C3—C2—H2A110.8S1A—C18A—H18A109.5
N1—C2—H2B110.8S1A—C18A—H18B109.5
C3—C2—H2B110.8H18A—C18A—H18B109.5
H2A—C2—H2B108.9S1A—C18A—H18C109.5
N4—C3—C2102.6 (2)H18A—C18A—H18C109.5
N4—C3—H3A111.3H18B—C18A—H18C109.5
C2—C3—H3A111.3O2B—S1B—C18B107 (2)
N4—C3—H3B111.3O2B—S1B—C17B108 (2)
C2—C3—H3B111.3C18B—S1B—C17B101.7 (16)
H3A—C3—H3B109.2S1B—C17B—H17D109.5
C5—N4—C8A121.9 (2)S1B—C17B—H17E109.5
C5—N4—C3125.9 (2)H17D—C17B—H17E109.5
C8A—N4—C3112.2 (2)S1B—C17B—H17F109.5
N5—C5—N4116.1 (2)H17D—C17B—H17F109.5
N5—C5—C6124.8 (2)H17E—C17B—H17F109.5
N4—C5—C6119.1 (2)S1B—C18B—H18D109.5
C5—N5—H5A119.8S1B—C18B—H18E109.5
C5—N5—H5B120.2H18D—C18B—H18E109.5
H5A—N5—H5B120.0S1B—C18B—H18F109.5
C5—C6—C9120.5 (2)H18D—C18B—H18F109.5
C5—C6—C7124.4 (2)H18E—C18B—H18F109.5
C9—C6—C7115.1 (2)O3A—S2A—C20A105.94 (15)
C6—C7—C8110.72 (19)O3A—S2A—C19A107.28 (13)
C6—C7—C12112.51 (19)C20A—S2A—C19A96.65 (19)
C8—C7—C12113.31 (19)S2A—C19A—H19A109.5
C6—C7—C1110.56 (19)S2A—C19A—H19B109.5
C8—C7—C1108.74 (19)H19A—C19A—H19B109.5
C12—C7—C1100.51 (18)S2A—C19A—H19C109.5
C8A—C8—C10120.4 (2)H19A—C19A—H19C109.5
C8A—C8—C7121.5 (2)H19B—C19A—H19C109.5
C10—C8—C7118.2 (2)S2A—C20A—H20A109.5
N1—C8A—C8128.9 (2)S2A—C20A—H20B109.5
N1—C8A—N4108.7 (2)H20A—C20A—H20B109.5
C8—C8A—N4122.3 (2)S2A—C20A—H20C109.5
N9—C9—C6174.4 (3)H20A—C20A—H20C109.5
N10—C10—C8177.5 (3)H20B—C20A—H20C109.5
C16—C11—C12121.8 (2)O3B—S2B—C20B97 (4)
C16—C11—N2128.7 (2)O3B—S2B—C19B93 (3)
C12—C11—N2109.4 (2)C20B—S2B—C19B72 (4)
C13—C12—C11120.7 (2)S2B—C19B—H19D109.5
C13—C12—C7129.7 (2)S2B—C19B—H19E109.5
C11—C12—C7109.5 (2)H19D—C19B—H19E109.5
C12—C13—C14117.1 (2)S2B—C19B—H19F109.5
C12—C13—H13121.4H19D—C19B—H19F109.5
C14—C13—H13121.4H19E—C19B—H19F109.5
C15—C14—C13122.8 (2)S2B—C20B—H20D109.5
C15—C14—Br1119.25 (19)S2B—C20B—H20E109.5
C13—C14—Br1117.94 (18)H20D—C20B—H20E109.5
C14—C15—C16119.6 (2)S2B—C20B—H20F109.5
C14—C15—H15120.2H20D—C20B—H20F109.5
C16—C15—H15120.2H20E—C20B—H20F109.5
C11—C16—C15117.8 (2)
O1—C1—N2—C11−175.7 (2)C2—N1—C8A—C8−178.1 (3)
C7—C1—N2—C115.0 (3)C2—N1—C8A—N40.9 (3)
C8A—N1—C2—C31.0 (3)C10—C8—C8A—N10.9 (4)
N1—C2—C3—N4−2.3 (3)C7—C8—C8A—N1−179.2 (2)
C2—C3—N4—C5−178.4 (2)C10—C8—C8A—N4−178.0 (2)
C2—C3—N4—C8A3.0 (3)C7—C8—C8A—N41.9 (3)
C8A—N4—C5—N5−179.2 (2)C5—N4—C8A—N1178.8 (2)
C3—N4—C5—N52.4 (3)C3—N4—C8A—N1−2.6 (3)
C8A—N4—C5—C60.3 (3)C5—N4—C8A—C8−2.1 (3)
C3—N4—C5—C6−178.2 (2)C3—N4—C8A—C8176.5 (2)
N5—C5—C6—C92.8 (4)C1—N2—C11—C16175.8 (3)
N4—C5—C6—C9−176.6 (2)C1—N2—C11—C12−2.6 (3)
N5—C5—C6—C7−178.9 (2)C16—C11—C12—C13−2.4 (4)
N4—C5—C6—C71.7 (3)N2—C11—C12—C13176.2 (2)
C5—C6—C7—C8−1.8 (3)C16—C11—C12—C7−179.5 (2)
C9—C6—C7—C8176.6 (2)N2—C11—C12—C7−1.0 (3)
C5—C6—C7—C12126.2 (2)C6—C7—C12—C13−55.6 (3)
C9—C6—C7—C12−55.4 (3)C8—C7—C12—C1370.9 (3)
C5—C6—C7—C1−122.3 (2)C1—C7—C12—C13−173.2 (2)
C9—C6—C7—C156.1 (3)C6—C7—C12—C11121.2 (2)
O1—C1—C7—C656.6 (3)C8—C7—C12—C11−112.3 (2)
N2—C1—C7—C6−124.1 (2)C1—C7—C12—C113.6 (2)
O1—C1—C7—C8−65.2 (3)C11—C12—C13—C140.0 (4)
N2—C1—C7—C8114.1 (2)C7—C12—C13—C14176.5 (2)
O1—C1—C7—C12175.6 (2)C12—C13—C14—C152.3 (4)
N2—C1—C7—C12−5.1 (2)C12—C13—C14—Br1−176.74 (18)
C6—C7—C8—C8A0.0 (3)C13—C14—C15—C16−2.1 (4)
C12—C7—C8—C8A−127.5 (2)Br1—C14—C15—C16176.9 (2)
C1—C7—C8—C8A121.6 (2)C12—C11—C16—C152.5 (4)
C6—C7—C8—C10179.8 (2)N2—C11—C16—C15−175.7 (2)
C12—C7—C8—C1052.4 (3)C14—C15—C16—C11−0.3 (4)
C1—C7—C8—C10−58.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2Ai0.901.982.855 (4)165
N1—H1···O2Bi0.902.002.87 (4)160
N2—H2···O2Aii0.901.912.793 (5)166
N2—H2···O2Bii0.901.942.82 (5)166
N5—H5A···O3Aiii0.902.203.034 (3)155
N5—H5B···O3A0.902.062.918 (3)160
C2—H2B···N9iv0.992.593.469 (4)148
C19A—H19A···N90.982.413.114 (5)128
C19A—H19C···O1v0.982.523.392 (4)148
C20A—H20B···O1v0.982.463.359 (4)152
  14 in total

1.  Crystal structure and Hirshfeld surface analysis of 6-amino-8-phenyl-1,3,4,8-tetra-hydro-2H-pyrido[1,2-a]pyrimidine-7,9-dicarbo-nitrile.

Authors:  Farid N Naghiyev; Tatiana A Tereshina; Victor N Khrustalev; Mehmet Akkurt; Ali N Khalilov; Anzurat A Akobirshoeva; İbrahim G Mamedov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-04-09

2.  Phenazine-1,6-dicarboxamides: Redox-Responsive Molecular Switches.

Authors:  Jingwei Yin; Ali N Khalilov; Pandi Muthupandi; Ruby Ladd; Vladimir B Birman
Journal:  J Am Chem Soc       Date:  2019-12-26       Impact factor: 15.419

3.  Organocatalytic enantioselective conjugate addition of ketones to isatylidine malononitriles.

Authors:  Lu Liu; Deyan Wu; Xiangmin Li; Sinan Wang; Hao Li; Jian Li; Wei Wang
Journal:  Chem Commun (Camb)       Date:  2011-12-21       Impact factor: 6.222

4.  Crystal Structure and Hirshfeld Surface Analysis of Acetoacetanilide Based Reaction Products.

Authors:  Farid N Naghiyev; Jonathan Cisterna; Ali N Khalilov; Abel M Maharramov; Rizvan K Askerov; Khammed A Asadov; Ibrahim G Mamedov; Khaver S Salmanli; Alejandro Cárdenas; Ivan Brito
Journal:  Molecules       Date:  2020-05-09       Impact factor: 4.411

5.  10-(2-Hy-droxy-eth-yl)-9-(2-hy-droxy-phen-yl)-3,3,6,6-tetra-methyl-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Authors:  Antar A Abdelhamid; Shaaban K Mohamed; Ali N Khalilov; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26

6.  5-Amino-6-benzoyl-8-nitro-2,3-di-hydro-1H-spiro-[imidazo[1,2-a]pyridine-7,3'-indolin]-2'-one dimethyl sulfoxide monosolvate.

Authors:  R A Nagalakshmi; J Suresh; S Sivakumar; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-26

7.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

8.  checkCIF validation ALERTS: what they mean and how to respond.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-01-01

9.  Crystal structure of 5-amino-5'-chloro-6-(4-chloro-benzo-yl)-8-nitro-2,3-di-hydro-1H-spiro-[imidazo[1,2-a]pyridine-7,3'-indolin]-2'-one including an unknown solvent mol-ecule.

Authors:  R A Nagalakshmi; J Suresh; S Sivakumar; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-06

10.  Crystal structure and Hirshfeld surface analysis of 3-amino-1-oxo-2,6,8-triphenyl-1,2,7,8-tetra-hydro-iso-quinoline-4-carbo-nitrile.

Authors:  Farid N Naghiyev; Maria M Grishina; Victor N Khrustalev; Ali N Khalilov; Mehmet Akkurt; Anzurat A Akobirshoeva; İbrahim G Mamedov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-01-29
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.